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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_009670
Query referenceOH1004
LocationChr02:130967436-130968227 (-)
DescriptionSimilar to Os01g0552300: Probable protein phosphatase 2C 5 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009670 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27800 Protein phosphatase specifically required for efficient dephosphorylation of the light-harvesting complex II outer antennae (LCHII) and transition from state 2 to state 1.
Role of plastid protein phosphatase TAP38 in LHCII dephosphorylation and thylakoid electron flow.2010 · DOI: 10.1371/journal.pbio.1000288
The PPH1 phosphatase is specifically involved in LHCII dephosphorylation and state transitions in Arabidopsis.2010 · DOI: 10.1073/pnas.0913810107

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0552300 Probable protein phosphatase 2C 5. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0007165signal transductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009767photosynthetic electron transport chainBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016311dephosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080005photosystem stoichiometry adjustmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009579thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000287magnesium ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004722protein serine/threonine phosphatase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016791phosphatase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030145manganese ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G27800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.889; coverage=57.325; evalue=3.35e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0552300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.091; coverage=56.051; evalue=4.1e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4325851KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.091; coverage=56.051; evalue=4.1e-07UniProtKB/Swiss-Prot DAT 2026 current_release