Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_009528`
Query reference	OH1004
Location	Chr02:128248301-128249532 (-)
Description	Similar to E2FE: E2F transcription factor-like E2FE (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009528 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48160`	Inhibitor of E2F-dependent activation of gene expression.	E2Ls, E2F-like repressors of Arabidopsis that bind to E2F sites in a monomeric form.2002 · DOI: 10.1074/jbc.m200913200 The DP-E2F-like gene DEL1 controls the endocycle in Arabidopsis thaliana.2005 · DOI: 10.1016/j.cub.2004.12.038 Atypical E2F activity restrains APC/CCCS52A2 function obligatory for endocycle onset.2008 · DOI: 10.1073/pnas.0806510105
`At3g01330`	Inhibitor of E2F-dependent activation of gene expression.	E2Ls, E2F-like repressors of Arabidopsis that bind to E2F sites in a monomeric form.2002 · DOI: 10.1074/jbc.m200913200 Role of an atypical E2F transcription factor in the control of Arabidopsis cell growth and differentiation.2004 · DOI: 10.1105/tpc.104.023978
`At5g14960`	Inhibitor of E2F-dependent regulation of gene expression.	E2Ls, E2F-like repressors of Arabidopsis that bind to E2F sites in a monomeric form.2002 · DOI: 10.1074/jbc.m200913200 The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis.2010 · DOI: 10.1007/s11103-009-9577-8

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000122	negative regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.126; coverage=93.296; evalue=3.07e-19; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008284	positive regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.025; coverage=88.827; evalue=7.8e-30; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.025; coverage=88.827; evalue=7.8e-30; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032466	negative regulation of cytokinesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.126; coverage=93.296; evalue=3.07e-19; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032876	negative regulation of DNA endoreduplication	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032877	positive regulation of DNA endoreduplication	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.126; coverage=93.296; evalue=3.07e-19; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042023	DNA endoreduplication	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.126; coverage=93.296; evalue=3.07e-19; UniProt GO evidence=IGI:ZFIN	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.126; coverage=93.296; evalue=3.07e-19; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.126; coverage=93.296; evalue=3.07e-19; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.31; coverage=93.855; evalue=5.81e-17; UniProt GO evidence=ISA:NTNU_SB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.31; coverage=93.855; evalue=5.81e-17; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.304; coverage=88.268; evalue=3.15e-33; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090575	RNA polymerase II transcription regulator complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.31; coverage=93.855; evalue=5.81e-17; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001217	DNA-binding transcription repressor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.126; coverage=93.296; evalue=3.07e-19; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.31; coverage=93.855; evalue=5.81e-17; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.31; coverage=93.855; evalue=5.81e-17; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990837	sequence-specific double-stranded DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.31; coverage=93.855; evalue=5.81e-17; UniProt GO evidence=IDA:ARUK-UCL	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G01330	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.304; coverage=88.268; evalue=3.15e-33	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G48160	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.852; coverage=90.503; evalue=1.78e-39	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G14960	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.025; coverage=88.827; evalue=7.8e-30	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dre:567941	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.126; coverage=93.296; evalue=3.07e-19	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:144455	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.31; coverage=93.855; evalue=5.81e-17	UniProtKB/Swiss-Prot DAT 2026 current_release