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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_009418
Query referenceOH1004
LocationChr02:125665159-125668152 (+)
DescriptionSimilar to 4CLL9: 4-coumarate--CoA ligase-like 9 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009418 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g63380 Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
A new type of peroxisomal acyl-coenzyme A synthetase from Arabidopsis thaliana has the catalytic capacity to activate biosynthetic precursors of jasmonic acid.2005 · DOI: 10.1074/jbc.m413578200
At1g20510 Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Identification of a peroxisomal acyl-activating enzyme involved in the biosynthesis of jasmonic acid in Arabidopsis.2006 · DOI: 10.1074/jbc.m607854200
Jasmonates meet fatty acids: functional analysis of a new acyl-coenzyme A synthetase family from Arabidopsis thaliana.2008 · DOI: 10.1093/jxb/erm325

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0901600 Carboxylate--CoA ligase that may use 4-coumarate as substrate. No verified direct reference in this release
Os01g0901500 Carboxylate--CoA ligase that may use 4-coumarate as substrate. No verified direct reference in this release
Os07g0280200 Carboxylate--CoA ligase that may use 4-coumarate as substrate. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009611response to woundingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.583; coverage=101.441; evalue=2.79e-161; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009617response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.583; coverage=101.441; evalue=2.79e-161; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009695jasmonic acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009698phenylpropanoid metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.615; coverage=102.523; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009753response to jasmonic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.583; coverage=101.441; evalue=2.79e-161; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031408oxylipin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005777peroxisomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.583; coverage=101.441; evalue=2.79e-161; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004321fatty-acyl-CoA synthase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00162074-coumarate-CoA ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.615; coverage=102.523; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016405CoA-ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0102391decanoate-CoA ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0; UniProt GO evidence=IEA:RHEAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0106290trans-cinnamate-CoA ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.615; coverage=102.523; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G20510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.583; coverage=101.441; evalue=2.79e-161UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G63380KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.97; coverage=101.441; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0901500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.622; coverage=101.441; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os07g0280200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.585; coverage=100.721; evalue=2.19e-159UniProtKB/Swiss-Prot DAT 2026 current_release