Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_008949 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:113865826-113869195 (+) |
| Description | Similar to JAC1: J domain-containing protein required for chloroplast accumulation response 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008949 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 41 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g75100 |
Required for chloroplast photorelocation movement; chloroplast accumulation upon low blue light and for chloroplast movement to the bottom of cells in darkness, by modulating chloroplast actin (Cp-actin) filaments distribution, appearance and disappearance. |
An auxilin-like J-domain protein, JAC1, regulates phototropin-mediated chloroplast movement in Arabidopsis.2005 · DOI: 10.1104/pp.105.067371 Overexpression of an auxilin-like gene (F9E10.5) can suppress Al uptake in roots of Arabidopsis.2007 · DOI: 10.1093/jxb/erl221
|
At4g12780 |
Promotes uncoating of clathrin-coated vesicles. | No verified direct reference in this release |
At4g12770 |
Promotes probably uncoating of clathrin-coated vesicles. | No verified direct reference in this release |
At1g75310 |
Auxilin-like protein 1. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006457 | protein folding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=TAS:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006898 | receptor-mediated endocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007015 | actin filament organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007029 | endoplasmic reticulum organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=ISS:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007030 | Golgi organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009903 | chloroplast avoidance movement | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009904 | chloroplast accumulation movement | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034067 | protein localization to Golgi apparatus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045806 | negative regulation of endocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045926 | negative regulation of growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046907 | intracellular transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048268 | clathrin coat assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071483 | cellular response to blue light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072318 | clathrin coat disassembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072583 | clathrin-dependent endocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072659 | protein localization to plasma membrane | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080183 | response to photooxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090160 | Golgi to lysosome transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900186 | negative regulation of clathrin-dependent endocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905443 | regulation of clathrin coat assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005925 | focal adhesion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009504 | cell plate | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030136 | clathrin-coated vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031410 | cytoplasmic vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031982 | vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004674 | protein serine/threonine kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030276 | clathrin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030332 | cyclin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=ISS:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044183 | protein folding chaperone | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=TAS:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106310 | protein serine kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G75100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.441; coverage=22.24; evalue=2.13e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G75310 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.261; coverage=14.308; evalue=1.8e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G12770 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.783; coverage=14.308; evalue=5.98e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G12780 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.87; coverage=14.308; evalue=3.47e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:2580 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=16.33; evalue=3.51e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release |