Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_008891 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:111494555-111495936 (+) |
| Description | Similar to PAF2: Proteasome subunit alpha type-1-B (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008891 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g47250 |
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. | |
At5g42790 |
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os02g0133800 |
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002376 | immune system process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.807; coverage=95.221; evalue=6.79e-94; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.807; coverage=95.221; evalue=6.79e-94; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010498 | proteasomal protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.303; coverage=87.5; evalue=4.98e-97; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030163 | protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.259; coverage=102.206; evalue=5.32e-153; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046685 | response to arsenic-containing substance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.259; coverage=102.206; evalue=5.32e-153; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061136 | regulation of proteasomal protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.807; coverage=95.221; evalue=6.79e-94; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000502 | proteasome complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.807; coverage=95.221; evalue=6.79e-94; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005813 | centrosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.807; coverage=95.221; evalue=6.79e-94; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005839 | proteasome core complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.259; coverage=102.206; evalue=5.32e-153; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.807; coverage=95.221; evalue=6.79e-94; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019773 | proteasome core complex, alpha-subunit complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045335 | phagocytic vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.303; coverage=87.5; evalue=4.98e-97; UniProt GO evidence=HDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001530 | lipopolysaccharide binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.807; coverage=95.221; evalue=6.79e-94; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G47250 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.698; coverage=102.206; evalue=2.09e-154 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G42790 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.259; coverage=102.206; evalue=5.32e-153 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0282363 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.303; coverage=87.5; evalue=4.98e-97 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os02g0133800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=75.21; coverage=87.5; evalue=1.97e-129 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:26440 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.807; coverage=95.221; evalue=6.79e-94 | UniProtKB/Swiss-Prot DAT 2026 current_release |