Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_008702 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:106450307-106451470 (+) |
| Description | Similar to At2g29900: Presenilin-like protein At2g29900 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008702 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 64 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g29900 |
Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. | No verified direct reference in this release |
At1g08700 |
Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001921 | positive regulation of receptor recycling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006509 | membrane protein ectodomain proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IDA:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007155 | cell adhesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007219 | Notch signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007220 | Notch receptor processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010628 | positive regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010629 | negative regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016485 | protein processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032469 | endoplasmic reticulum calcium ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032760 | positive regulation of tumor necrosis factor production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034205 | amyloid-beta formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035556 | intracellular signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042982 | amyloid precursor protein metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042987 | amyloid precursor protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IDA:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045821 | positive regulation of glycolytic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050808 | synapse organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055074 | calcium ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.254; coverage=108.01; evalue=9.32e-51; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060828 | regulation of canonical Wnt signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0098609 | cell-cell adhesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904646 | cellular response to amyloid-beta | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905908 | positive regulation of amyloid fibril formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990535 | neuron projection maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IGI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000059 | negative regulation of ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000139 | Golgi membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000776 | kinetochore | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IMP:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005640 | nuclear outer membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005743 | mitochondrial inner membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005789 | endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005790 | smooth endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005791 | rough endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005798 | Golgi-associated vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005813 | centrosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005938 | cell cortex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009986 | cell surface | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016235 | aggresome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031901 | early endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031965 | nuclear membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.088; coverage=103.101; evalue=4.73e-51; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IMP:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035253 | ciliary rootlet | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035577 | azurophil granule membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044233 | mitochondria-associated endoplasmic reticulum membrane contact site | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045121 | membrane raft | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070765 | gamma-secretase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004175 | endopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004190 | aspartic-type endopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=NAS:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005262 | calcium channel activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008013 | beta-catenin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030165 | PDZ domain binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042500 | aspartic endopeptidase activity, intramembrane cleaving | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045296 | cadherin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051117 | ATPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IPI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060090 | molecular adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070851 | growth factor receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50; UniProt GO evidence=IPI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G08700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.796; coverage=118.088; evalue=2.71e-125 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G29900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.332; coverage=102.842; evalue=5.96e-166 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cfa:403408 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.254; coverage=108.01; evalue=9.32e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:5663 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=101.292; evalue=1.06e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release |