Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_008570 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:102977161-102980739 (+) |
| Description | Similar to ECT4: YTH domain-containing protein ECT4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008570 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 29 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g55500 |
Specifically recognizes and binds N6-methyladenosine (m6A)-containing RNAs, and regulates mRNA stability (Probable). | |
At3g13460 |
Specifically recognizes and binds N6-methyladenosine (m6A)-containing RNAs, and regulates mRNA stability (Probable). |
The YTH Domain Protein ECT2 Is an m6A Reader Required for Normal Trichome Branching in Arabidopsis.2018 · DOI: 10.1105/tpc.17.00854
|
At5g61020 |
Specifically recognizes and binds N6-methyladenosine (m6A)-containing RNAs, and regulates mRNA stability (Probable). | |
At3g03950 |
Specifically recognizes and binds N6-methyladenosine (m6A)-containing RNAs, and regulates mRNA stability (By similarity). | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006402 | mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.727; coverage=52.885; evalue=1.33e-75; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007276 | gamete generation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007284 | spermatogonial cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009615 | response to virus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.836; coverage=47.917; evalue=6.61e-88; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009751 | response to salicylic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.727; coverage=52.885; evalue=1.33e-75; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019722 | calcium-mediated signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.727; coverage=52.885; evalue=1.33e-75; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030155 | regulation of cell adhesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034063 | stress granule assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043488 | regulation of mRNA stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045087 | innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045746 | negative regulation of Notch signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048255 | mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.412; coverage=81.731; evalue=1.49e-93; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048598 | embryonic morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060339 | negative regulation of type I interferon-mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061157 | mRNA destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.412; coverage=81.731; evalue=1.49e-93; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070925 | organelle assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903679 | positive regulation of cap-independent translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000232 | regulation of rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000737 | negative regulation of stem cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000932 | P-body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.727; coverage=52.885; evalue=1.33e-75; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.412; coverage=81.731; evalue=1.49e-93; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.412; coverage=81.731; evalue=1.49e-93; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.836; coverage=47.917; evalue=6.61e-88; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010494 | cytoplasmic stress granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.836; coverage=47.917; evalue=6.61e-88; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034451 | centriolar satellite | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036464 | cytoplasmic ribonucleoprotein granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.412; coverage=81.731; evalue=1.49e-93; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0062153 | C5-methylcytidine-containing RNA reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990247 | N6-methyladenosine-containing RNA reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.727; coverage=52.885; evalue=1.33e-75; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G55500 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.412; coverage=81.731; evalue=1.49e-93 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G03950 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.727; coverage=52.885; evalue=1.33e-75 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G13460 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.836; coverage=47.917; evalue=6.61e-88 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G61020 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.443; coverage=46.314; evalue=6.82e-83 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:213541 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.66; coverage=30.128; evalue=1.15e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release |