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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_008567
Query referenceOH1004
LocationChr02:102881705-102884595 (-)
DescriptionSimilar to HCF173: Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_008567 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g16720 Auxiliary factor required, together with HCF244, for the biogenesis of photosystem II (PSII), especially for the synthesis of the reaction center proteins (e.g. D1), via the regulation of the corresponding mRNA (e.g. psbA) translation initiation (ribosomal loading) and stabilization.
The nuclear-encoded factor HCF173 is involved in the initiation of translation of the psbA mRNA in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.106.042895
The Arabidopsis pentatricopeptide repeat protein LPE1 and its maize ortholog are required for translation of the chloroplast psbJ RNA.2019 · DOI: 10.1111/tpj.14308
At5g02240 Uncharacterized protein At5g02240. No verified direct reference in this release
At2g37660 Uncharacterized protein At2g37660, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006413translational initiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.0; coverage=16.639; evalue=2.89e-07; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010207photosystem II assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015979photosynthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.052; coverage=16.14; evalue=2.65e-07; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015995chlorophyll biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.069; coverage=19.301; evalue=1.71e-06; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.0; coverage=16.639; evalue=2.89e-07; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.01; coverage=17.138; evalue=2.08e-06; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.0; coverage=16.639; evalue=2.89e-07; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.0; coverage=16.639; evalue=2.89e-07; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009523photosystem IICellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009579thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.01; coverage=17.138; evalue=2.08e-06; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042651thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048046apoplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.0; coverage=16.639; evalue=2.89e-07; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005507copper ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.01; coverage=17.138; evalue=2.08e-06; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016491oxidoreductase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.052; coverage=16.14; evalue=2.65e-07; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016854racemase and epimerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00337283,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.069; coverage=19.301; evalue=1.71e-06; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G16720KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.4; coverage=83.195; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G37660KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.01; coverage=17.138; evalue=2.08e-06UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G02240KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.0; coverage=16.639; evalue=2.89e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyn:slr0399KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.052; coverage=16.14; evalue=2.65e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:100281890KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.069; coverage=19.301; evalue=1.71e-06UniProtKB/Swiss-Prot DAT 2026 current_release