Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_008552 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:102571232-102574433 (+) |
| Description | Similar to UVR3: (6-4)DNA photolyase (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008552 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 48 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g15620 |
Involved in repair of UV radiation-induced DNA damage. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os02g0204400 |
Involved in repair of UV radiation-induced DNA damage. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006094 | gluconeogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006111 | regulation of gluconeogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.353; coverage=94.326; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006290 | pyrimidine dimer repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.622; coverage=90.071; evalue=1.52e-174; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007623 | circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.622; coverage=90.071; evalue=1.52e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009416 | response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.622; coverage=90.071; evalue=1.52e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0014823 | response to activity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019915 | lipid storage | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031397 | negative regulation of protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031398 | positive regulation of protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032868 | response to insulin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032922 | circadian regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033762 | response to glucagon | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042593 | glucose homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042752 | regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042754 | negative regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042770 | signal transduction in response to DNA damage | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043153 | entrainment of circadian clock by photoperiod | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045721 | negative regulation of gluconeogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.622; coverage=90.071; evalue=1.52e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045722 | positive regulation of gluconeogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045744 | negative regulation of G protein-coupled receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.622; coverage=90.071; evalue=1.52e-174; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000001 | regulation of DNA damage checkpoint | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000323 | negative regulation of nuclear receptor-mediated glucocorticoid signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000850 | negative regulation of glucocorticoid secretion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.622; coverage=90.071; evalue=1.52e-174; UniProt GO evidence=ISS:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042644 | chloroplast nucleoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003690 | double-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003904 | deoxyribodipyrimidine photo-lyase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003914 | DNA (6-4) photolyase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009881 | photoreceptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.622; coverage=90.071; evalue=1.52e-174; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016922 | nuclear receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019900 | kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019901 | protein kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019902 | phosphatase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.33; coverage=90.248; evalue=1.86e-174; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042826 | histone deacetylase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070888 | E-box binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071949 | FAD binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140297 | DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G15620 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.403; coverage=98.582; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os02g0204400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.353; coverage=94.326; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:299691 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.134; coverage=90.248; evalue=2.87e-174 | UniProtKB/Swiss-Prot DAT 2026 current_release |