Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_007709 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:57465879-57472094 (+) |
| Description | Similar to At1g21570: Zinc finger CCCH domain-containing protein 7 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_007709 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 21 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g21570 |
Possesses RNA-binding and ribonuclease activities in vitro. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.249; coverage=19.194; evalue=5.09e-31; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006401 | RNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.833; coverage=11.475; evalue=1.09e-42; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010793 | regulation of mRNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.249; coverage=19.194; evalue=5.09e-31; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031124 | mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.012; coverage=11.134; evalue=7.22e-41; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033621 | nuclear mRNA surveillance of meiosis-specific transcripts | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.433; coverage=8.675; evalue=1.63e-21; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.833; coverage=11.475; evalue=1.09e-42; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051168 | nuclear export | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.249; coverage=19.194; evalue=5.09e-31; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071030 | nuclear mRNA surveillance of spliceosomal pre-mRNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.433; coverage=8.675; evalue=1.63e-21; UniProt GO evidence=EXP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.433; coverage=8.675; evalue=1.63e-21; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.728; coverage=31.148; evalue=4.11e-150; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.833; coverage=11.475; evalue=1.09e-42; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.833; coverage=11.475; evalue=1.09e-42; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.433; coverage=8.675; evalue=1.63e-21; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990477 | MTREC complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.433; coverage=8.675; evalue=1.63e-21; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.728; coverage=31.148; evalue=4.11e-150; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.728; coverage=31.148; evalue=4.11e-150; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004518 | nuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.728; coverage=31.148; evalue=4.11e-150; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.728; coverage=31.148; evalue=4.11e-150; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016787 | hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.728; coverage=31.148; evalue=4.11e-150; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046332 | SMAD binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.012; coverage=11.134; evalue=7.22e-41; UniProt GO evidence=IPI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070412 | R-SMAD binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.833; coverage=11.475; evalue=1.09e-42; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | dme:Dmel_CG6694 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.249; coverage=19.194; evalue=5.09e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:23144 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.833; coverage=11.475; evalue=1.09e-42 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:223642 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.012; coverage=11.134; evalue=7.22e-41 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2540291 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.433; coverage=8.675; evalue=1.63e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release |