Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_007640 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:54947970-54950781 (-) |
| Description | Similar to EMB1789: Zinc finger CCCH domain-containing protein 65 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_007640 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g56930 |
Possesses RNA-binding and ribonuclease activities in vitro. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0572100 |
Zinc finger CCCH domain-containing protein 7. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006353 | DNA-templated transcription termination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=14.073; evalue=4.91e-12; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032785 | negative regulation of DNA-templated transcription, elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071027 | nuclear RNA surveillance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=14.073; evalue=4.91e-12; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0110064 | lncRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=14.073; evalue=4.91e-12; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140744 | negative regulation of lncRNA transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=14.073; evalue=4.91e-12; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005694 | chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=14.073; evalue=4.91e-12; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=14.073; evalue=4.91e-12; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.176; coverage=14.073; evalue=5.26e-12; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004518 | nuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016787 | hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990841 | promoter-specific chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=14.073; evalue=4.91e-12; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G56930 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.778; coverage=52.152; evalue=5.63e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0572100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.958; coverage=39.404; evalue=1.07e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:23211 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=14.073; evalue=4.91e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:330474 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.176; coverage=14.073; evalue=5.26e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4326353 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.958; coverage=39.404; evalue=1.07e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release |