Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_007357 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:45396416-45402772 (-) |
| Description | Similar to RNE: Ribonuclease E/G-like protein%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_007357 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 36 GO annotations and 7 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g04270 |
Involved in intercistronic processing of primary transcripts from chloroplast operons. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000967 | rRNA 5'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IMP:EcoCyc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006401 | RNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IDA:EcoCyc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006402 | mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.21; coverage=36.114; evalue=1.11e-61; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008033 | tRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.21; coverage=36.114; evalue=1.11e-61; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009658 | chloroplast organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010239 | chloroplast mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032781 | positive regulation of ATP-dependent activity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IDA:DisProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051259 | protein complex oligomerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IPI:DisProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051289 | protein homotetramerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IPI:EcoCyc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.933; coverage=41.164; evalue=3.06e-55; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901259 | chloroplast rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.25; coverage=38.639; evalue=7.94e-51; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009898 | cytoplasmic side of plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.21; coverage=36.114; evalue=1.11e-61; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902555 | endoribonuclease complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IDA:EcoCyc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000049 | tRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000287 | magnesium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.21; coverage=36.114; evalue=1.11e-61; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004519 | endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.933; coverage=41.164; evalue=3.06e-55; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004521 | RNA endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004540 | RNA nuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.21; coverage=36.114; evalue=1.11e-61; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008312 | 7S RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IMP:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008995 | ribonuclease E activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.21; coverage=36.114; evalue=1.11e-61; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016787 | hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017151 | DEAD/H-box RNA helicase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IPI:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019843 | rRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.21; coverage=36.114; evalue=1.11e-61; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060090 | molecular adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56; UniProt GO evidence=EXP:DisProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2001070 | starch binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G04270 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.32; coverage=101.647; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bab:bbp_317 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.25; coverage=38.639; evalue=7.94e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ecj:JW1071 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | eco:b1084 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ecoc:C3026_06565 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.145; coverage=36.443; evalue=1.97e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hin:HI_0413 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.21; coverage=36.114; evalue=1.11e-61 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hin:HI_1353 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.933; coverage=41.164; evalue=3.06e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release |