Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_007041 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:34246354-34247168 (-) |
| Description | Similar to TAF9: Transcription initiation factor TFIID subunit 9 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_007041 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 34 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g54140 |
TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000492 | box C/D snoRNP assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006282 | regulation of DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.0; coverage=65.327; evalue=2.86e-40; UniProt GO evidence=IC:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032435 | negative regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042789 | mRNA transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043484 | regulation of RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050821 | protein stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051123 | RNA polymerase II preinitiation complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.061; coverage=66.332; evalue=6.82e-76; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060261 | positive regulation of transcription initiation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060760 | positive regulation of response to cytokine stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070555 | response to interleukin-1 | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902065 | response to L-glutamate | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=51.562; coverage=64.322; evalue=7.54e-40; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000124 | SAGA complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.061; coverage=66.332; evalue=6.82e-76; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.061; coverage=66.332; evalue=6.82e-76; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005669 | transcription factor TFIID complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.061; coverage=66.332; evalue=6.82e-76; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033276 | transcription factor TFTC complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070761 | pre-snoRNP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071339 | MLL1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002039 | p53 binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.061; coverage=66.332; evalue=6.82e-76; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004402 | histone acetyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016251 | RNA polymerase II general transcription initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.0; coverage=65.327; evalue=2.86e-40; UniProt GO evidence=IC:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046982 | protein heterodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.061; coverage=66.332; evalue=6.82e-76; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051117 | ATPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070742 | C2H2 zinc finger domain binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140297 | DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G54140 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.061; coverage=66.332; evalue=6.82e-76 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:532936 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=68.342; evalue=1.99e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:6880 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.0; coverage=65.327; evalue=2.86e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:108143 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.562; coverage=64.322; evalue=2.39e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:373541 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=51.562; coverage=64.322; evalue=7.54e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release |