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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_006323
Query referenceOH1004
LocationChr02:6826405-6828570 (-)
DescriptionSimilar to VTI13: Vesicle transport v-SNARE 13 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_006323 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 48 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g29100 May function as a v-SNARE responsible for targeting vesicles involved in the secretory pathway (By similarity).
SNARE VTI13 plays a unique role in endosomal trafficking pathways associated with the vacuole and is essential for cell wall organization and root hair growth in arabidopsis.2014 · DOI: 10.1093/aob/mcu041
At5g39510 Functions as a v-SNARE responsible for targeting AtELP-containing vesicles from the trans-Golgi network (TGN) to the prevacuolar compartment (PVC) and mediates liposome fusion.
The plant vesicle-associated SNARE AtVTI1a likely mediates vesicle transport from the trans-Golgi network to the prevacuolar compartment.1999 · DOI: 10.1091/mbc.10.7.2251
SGR2, a phospholipase-like protein, and ZIG/SGR4, a SNARE, are involved in the shoot gravitropism of Arabidopsis.2002 · DOI: 10.1105/tpc.010215
Involvement of the vacuoles of the endodermis in the early process of shoot gravitropism in Arabidopsis.2002 · DOI: 10.1105/tpc.010216
Conversion of functional specificity in Qb-SNARE VTI1 homologues of Arabidopsis.2005 · DOI: 10.1016/j.cub.2005.02.021
Divergent functions of VTI12 and VTI11 in trafficking to storage and lytic vacuoles in Arabidopsis.2007 · DOI: 10.1073/pnas.0611147104
The occurrence of 'bulbs', a complex configuration of the vacuolar membrane, is affected by mutations of vacuolar SNARE and phospholipase in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2011.04665.x
Functional redundancy between trans-Golgi network SNARE family members in Arabidopsis thaliana.2013 · DOI: 10.1186/1471-2091-14-22
Mutations in the SGR4, SGR5 and SGR6 loci of Arabidopsis thaliana alter the shoot gravitropism.1997 · DOI: 10.1093/oxfordjournals.pcp.a029201
At1g26670 Together with either SYP41 or SYP61, required for membrane fusion; the fusion of phospholipid vesicles containing SYP41 or SYP61 and VTI12 is triggered by YKT61 and YKT62.
Conversion of functional specificity in Qb-SNARE VTI1 homologues of Arabidopsis.2005 · DOI: 10.1016/j.cub.2005.02.021
YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network.2005 · DOI: 10.1016/j.jmb.2005.04.061
Divergent functions of VTI12 and VTI11 in trafficking to storage and lytic vacuoles in Arabidopsis.2007 · DOI: 10.1073/pnas.0611147104
Functional redundancy between trans-Golgi network SNARE family members in Arabidopsis thaliana.2013 · DOI: 10.1186/1471-2091-14-22

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006623protein targeting to vacuoleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006886intracellular protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006888endoplasmic reticulum to Golgi vesicle-mediated transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISS:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006891intra-Golgi vesicle-mediated transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=TAS:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006896Golgi to vacuole transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006906vesicle fusionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006914autophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009630gravitropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=IMP:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009664plant-type cell wall organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016189synaptic vesicle to endosome fusionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016236macroautophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032456endocytic recyclingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042147retrograde transport, endosome to GolgiBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048280vesicle fusion with Golgi apparatusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISS:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051222positive regulation of protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0075733intracellular transport of virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080147root hair cell developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080171lytic vacuole organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990019protein storage vacuole organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.727; coverage=99.548; evalue=2.87e-108; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000139Golgi membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.727; coverage=99.548; evalue=2.87e-108; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005768endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.727; coverage=99.548; evalue=2.87e-108; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005770late endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005773vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005774vacuolar membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005776autophagosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005802trans-Golgi networkCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=IEA:GOCUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.727; coverage=99.548; evalue=2.87e-108; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009705plant-type vacuole membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010008endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012507ER to Golgi transport vesicle membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030136clathrin-coated vesicleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISS:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030140trans-Golgi network transport vesicleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=IDA:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031201SNARE complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031901early endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031902late endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032588trans-Golgi network membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.769; coverage=100.0; evalue=9.53e-34; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043657host cellCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110; UniProt GO evidence=IEA:GOCUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048471perinuclear region of cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34; UniProt GO evidence=ISS:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000149SNARE bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005483soluble NSF attachment protein activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.727; coverage=99.548; evalue=2.87e-108; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005484SNAP receptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G26670KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.727; coverage=99.548; evalue=2.87e-108UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G29100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.851; coverage=100.0; evalue=1.13e-117UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G39510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.208; coverage=100.0; evalue=1.03e-110UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:143187KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.769; coverage=100.0; evalue=9.53e-34UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:53611KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.273; coverage=99.548; evalue=1.16e-34UniProtKB/Swiss-Prot DAT 2026 current_release