Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_006092 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:1632562-1635888 (-) |
| Description | Similar to SGF29A: SAGA-associated factor 29 homolog A (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_006092 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g27460 |
Chromatin reader component of the transcription regulatory histone acetylation (HAT) complex SAGA (By similarity). | |
At5g40550 |
Chromatin reader component of the transcription regulatory histone acetylation (HAT) complex SAGA. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006282 | regulation of DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.104; coverage=100.0; evalue=2.21e-157; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.104; coverage=100.0; evalue=2.21e-157; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.104; coverage=100.0; evalue=2.21e-157; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034976 | response to endoplasmic reticulum stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043484 | regulation of RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045815 | transcription initiation-coupled chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045995 | regulation of embryonic development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=ISS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051302 | regulation of cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051726 | regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071169 | establishment of protein localization to chromatin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090043 | regulation of tubulin deacetylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000124 | SAGA complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.104; coverage=100.0; evalue=2.21e-157; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.104; coverage=100.0; evalue=2.21e-157; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070461 | SAGA-type complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072686 | mitotic spindle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140672 | ATAC complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140002 | histone H3K4me3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140003 | histone H3K36me3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140034 | methylation-dependent protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G27460 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.104; coverage=100.0; evalue=2.21e-157 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G40550 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.19; coverage=101.866; evalue=2.64e-145 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:112869 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.609; coverage=51.493; evalue=3.42e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:75565 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.609; coverage=51.493; evalue=4.64e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:293488 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.609; coverage=51.493; evalue=4.51e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release |