Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_005936`
Query reference	OH1004
Location	Chr01:175909794-175911965 (+)
Description	Similar to RHM1: Trifunctional UDP-glucose 4%2C6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3%2C5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005936 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g78570`	Trifunctional enzyme involved in UDP-beta-L-rhamnose biosynthesis, a precursor of the primary cell wall components rhamnogalacturonan I (RG-I) and rhamnogalacturonan II (RG-II).	Functional analysis of Arabidopsis thaliana RHM2/MUM4, a multidomain protein involved in UDP-D-glucose to UDP-L-rhamnose conversion.2007 · DOI: 10.1074/jbc.m610196200 Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis.2008 · DOI: 10.1105/tpc.108.058040 Overexpression of a cytosol-localized rhamnose biosynthesis protein encoded by Arabidopsis RHM1 gene increases rhamnose content in cell wall.2009 · DOI: 10.1016/j.plaphy.2008.10.011
`At3g14790`	Trifunctional enzyme involved in UDP-beta-L-rhamnose biosynthesis, a precursor of the primary cell wall components rhamnogalacturonan I (RG-I) and rhamnogalacturonan II (RG-II).	Functional analysis of Arabidopsis thaliana RHM2/MUM4, a multidomain protein involved in UDP-D-glucose to UDP-L-rhamnose conversion.2007 · DOI: 10.1074/jbc.m610196200
`At1g53500`	Trifunctional enzyme involved in UDP-beta-L-rhamnose biosynthesis, a precursor of the primary cell wall components rhamnogalacturonan I (RG-I) and rhamnogalacturonan II (RG-II).	RHM2 is involved in mucilage pectin synthesis and is required for the development of the seed coat in Arabidopsis.2004 · DOI: 10.1104/pp.103.034314 Functional analysis of Arabidopsis thaliana RHM2/MUM4, a multidomain protein involved in UDP-D-glucose to UDP-L-rhamnose conversion.2007 · DOI: 10.1074/jbc.m610196200
`At1g63000`	Bifunctional enzyme involved in dTDP-beta-L-rhamnose biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009225	nucleotide-sugar metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.824; coverage=52.067; evalue=8.09e-106; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010192	mucilage biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=72.576; coverage=101.072; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010214	seed coat development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=72.576; coverage=101.072; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010253	UDP-rhamnose biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010315	auxin export across the plasma membrane	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019300	rhamnose biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.824; coverage=52.067; evalue=8.09e-106; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019305	dTDP-rhamnose biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.028; coverage=43.798; evalue=7.37e-160; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042127	regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051555	flavonol biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071555	cell wall organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=72.576; coverage=101.072; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.028; coverage=43.798; evalue=7.37e-160; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009506	plasmodesma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010494	cytoplasmic stress granule	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008460	dTDP-glucose 4,6-dehydratase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008830	dTDP-4-dehydrorhamnose 3,5-epimerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.028; coverage=43.798; evalue=7.37e-160; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008831	dTDP-4-dehydrorhamnose reductase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.028; coverage=43.798; evalue=7.37e-160; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010280	UDP-L-rhamnose synthase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010489	UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=72.576; coverage=101.072; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010490	UDP-4-keto-rhamnose-4-keto-reductase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=72.576; coverage=101.072; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016491	oxidoreductase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016853	isomerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050377	UDP-glucose 4,6-dehydratase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G53500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=72.576; coverage=101.072; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G63000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.028; coverage=43.798; evalue=7.37e-160	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G78570	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.523; coverage=101.991; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G14790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.727; coverage=101.072; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release