Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_005848 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:174465129-174467016 (+) |
| Description | Similar to CCS: Copper chaperone for superoxide dismutase%2C chloroplastic/cytosolic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005848 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g12520 |
Copper chaperone for the superoxide dismutases CSD1, CSD2 and CSD3. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0573200 |
Copper chaperone for superoxide dismutases (SODs). | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006878 | intracellular copper ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019430 | removal of superoxide radicals | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034599 | cellular response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.417; coverage=77.67; evalue=8.14e-38; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051353 | positive regulation of oxidoreductase activity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.25; coverage=77.67; evalue=2.31e-38; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051604 | protein maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.417; coverage=77.67; evalue=8.14e-38; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.25; coverage=77.67; evalue=2.31e-38; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.417; coverage=77.67; evalue=8.14e-38; UniProt GO evidence=HTP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005758 | mitochondrial intermembrane space | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.25; coverage=77.67; evalue=2.31e-38; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005507 | copper ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015035 | protein-disulfide reductase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.417; coverage=77.67; evalue=8.14e-38; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016532 | superoxide dismutase copper chaperone activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.25; coverage=77.67; evalue=2.31e-38; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045296 | cadherin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.417; coverage=77.67; evalue=8.14e-38; UniProt GO evidence=HDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G12520 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.79; coverage=92.557; evalue=9.97e-121 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0573200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.565; coverage=74.434; evalue=3.03e-111 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:9973 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.417; coverage=77.67; evalue=8.14e-38 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:12460 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.25; coverage=77.67; evalue=2.31e-38 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ssc:414913 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.95; coverage=78.317; evalue=8.67e-38 | UniProtKB/Swiss-Prot DAT 2026 current_release |