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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_005405
Query referenceOH1004
LocationChr01:162690949-162696060 (-)
DescriptionSimilar to HCF107: Protein high chlorophyll fluorescent 107 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005405 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g17040 Involved, directly or indirectly, in the processing of chloroplast encoded mRNAs.
The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts.2001 · DOI: 10.1105/tpc.010090
The nuclear gene HCF107 encodes a membrane-associated R-TPR (RNA tetratricopeptide repeat)-containing protein involved in expression of the plastidial psbH gene in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02409.x
At4g03430 Pre-mRNA splicing factor required for splicing and for the turnover of unstable transcripts. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000244spliceosomal tri-snRNP complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.719; coverage=35.229; evalue=8.91e-14; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000245spliceosomal complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.882; coverage=25.216; evalue=2.99e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000398mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.719; coverage=35.229; evalue=8.91e-14; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006396RNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006417regulation of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009657plastid organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010114response to red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045292mRNA cis splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.719; coverage=35.229; evalue=8.91e-14; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000974Prp19 complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.882; coverage=25.216; evalue=2.99e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046540U4/U6 x U5 tri-snRNP complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.719; coverage=35.229; evalue=8.91e-14; UniProt GO evidence=IDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071007U2-type catalytic step 2 spliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.882; coverage=25.216; evalue=2.99e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071013catalytic step 2 spliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.719; coverage=35.229; evalue=8.91e-14; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071014post-mRNA release spliceosomal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.882; coverage=25.216; evalue=2.99e-13; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003727single-stranded RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008428ribonuclease inhibitor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G17040KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.912; coverage=72.806; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGspo:2541185KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.719; coverage=35.229; evalue=8.91e-14UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGyli:2907810KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.882; coverage=25.216; evalue=2.99e-13UniProtKB/Swiss-Prot DAT 2026 current_release