Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_005380`
Query reference	OH1004
Location	Chr01:162256129-162257404 (-)
Description	Similar to MYB12: Transcription factor MYB12 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005380 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47460`	Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis.	The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis.2005 · DOI: 10.1104/pp.104.058032 Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x
`At5g49330`	Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis.	Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x
`At3g62610`	Modulates overall growth by reducing the proliferation activity of meristematic cells and delaying development.	Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The AtMYB11 gene from Arabidopsis is expressed in meristematic cells and modulates growth in planta and organogenesis in vitro.2008 · DOI: 10.1093/jxb/ern027 The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006950	response to stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.014; coverage=46.254; evalue=1.38e-63; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008285	negative regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.582; coverage=57.655; evalue=1.83e-64; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009416	response to light stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009813	flavonoid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010224	response to UV-B	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043477	pigment biosynthetic process involved in pigment accumulation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.43; coverage=48.534; evalue=6.7e-64; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043480	pigment accumulation in tissues	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.43; coverage=48.534; evalue=6.7e-64; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046148	pigment biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.014; coverage=46.254; evalue=1.38e-63; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048640	negative regulation of developmental growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.582; coverage=57.655; evalue=1.83e-64; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.43; coverage=48.534; evalue=6.7e-64; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051555	flavonol biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051559	phlobaphene biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.43; coverage=48.534; evalue=6.7e-64; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052322	positive regulation of phytoalexin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.43; coverage=48.534; evalue=6.7e-64; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900367	positive regulation of defense response to insect	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.43; coverage=48.534; evalue=6.7e-64; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900386	positive regulation of flavonol biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.2; coverage=40.717; evalue=9.98e-67; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.43; coverage=48.534; evalue=6.7e-64; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990841	promoter-specific chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.582; coverage=57.655; evalue=1.83e-64; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G47460	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.409; coverage=51.792; evalue=3.75e-68	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G62610	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.582; coverage=57.655; evalue=1.83e-64	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G49330	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.2; coverage=40.717; evalue=9.98e-67	UniProtKB/Swiss-Prot DAT 2026 current_release