Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_005248 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:158888329-158892117 (+) |
| Description | Similar to CCD8B: Carotenoid cleavage dioxygenase 8 homolog B%2C chloroplastic (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005248 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g32810 |
May cleave a CCD7-derived C₂₇ carotenoid derivative in strigolactone biosynthesis. |
MAX4 and RMS1 are orthologous dioxygenase-like genes that regulate shoot branching in Arabidopsis and pea.2003 · DOI: 10.1101/gad.256603
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0746400 |
Involved in strigolactones biosynthesis by cleaving the C(27) 9-cis-10'-apo-beta-carotenal produced by CCD7. | No verified direct reference in this release |
Os01g0566500 |
May be involved in strigolactones biosynthesis. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001523 | retinoid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.863; coverage=94.756; evalue=2.13e-49; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009635 | response to herbicide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.774; coverage=95.841; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.774; coverage=95.841; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009926 | auxin polar transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.774; coverage=95.841; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009965 | leaf morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.774; coverage=95.841; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010223 | secondary shoot formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016121 | carotene catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016124 | xanthophyll catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.774; coverage=95.841; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042572 | retinol metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.459; coverage=90.235; evalue=7.72e-57; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042574 | retinal metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.459; coverage=90.235; evalue=7.72e-57; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901601 | strigolactone biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901810 | beta-carotene metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.863; coverage=94.756; evalue=2.13e-49; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.863; coverage=94.756; evalue=2.13e-49; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.774; coverage=95.841; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003834 | beta-carotene 15,15'-dioxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.459; coverage=90.235; evalue=7.72e-57; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004497 | monooxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.459; coverage=90.235; evalue=7.72e-57; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010436 | carotenoid dioxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0102251 | all-trans-beta-apo-10'-carotenal cleavage oxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0102396 | 9-cis-10'-apo-beta-carotenal cleavage oxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106422 | carotenoid isomerooxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.459; coverage=90.235; evalue=7.72e-57; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ag:CAO85888 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.459; coverage=90.235; evalue=7.72e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G32810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.774; coverage=95.841; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0566500 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.86; coverage=88.065; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0746400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.938; coverage=87.703; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:63857 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.863; coverage=94.756; evalue=2.13e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4327933 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.86; coverage=88.065; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |