Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_005194`
Query reference	OH1004
Location	Chr01:157529510-157532494 (-)
Description	Similar to HD3A: Protein HEADING DATE 3A (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005194 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65480`	Component of the mobile flower-promoting signal (floral stimulus or florigen).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0157700`	Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering.	Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions.2002 · DOI: 10.1093/pcp/pcf156 Hd3a protein is a mobile flowering signal in rice.2007 · DOI: 10.1126/science.1141753 Hd3a and RFT1 are essential for flowering in rice.2008 · DOI: 10.1242/dev.008631 A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.2009 · DOI: 10.1242/dev.040170
`Os06g0157500`	Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering.	Hd3a and RFT1 are essential for flowering in rice.2008 · DOI: 10.1242/dev.008631 A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.2009 · DOI: 10.1242/dev.040170 OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDKγ4.2017 · DOI: 10.1105/tpc.16.00728

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009911	positive regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.964; coverage=80.095; evalue=4.44e-95; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010022	meristem determinacy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.964; coverage=80.095; evalue=4.44e-95; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010048	vernalization response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.647; coverage=80.569; evalue=5.13e-101; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.964; coverage=80.095; evalue=4.44e-95; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010220	positive regulation of vernalization response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.647; coverage=80.569; evalue=5.13e-101; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010229	inflorescence development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048572	short-day photoperiodism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IMP:Gramene	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048573	photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.778; coverage=81.043; evalue=2.24e-101; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048575	short-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000028	regulation of photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.647; coverage=80.569; evalue=5.13e-101; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.778; coverage=81.043; evalue=2.24e-101; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008429	phosphatidylethanolamine binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105; UniProt GO evidence=ISS:Gramene	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G65480	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.964; coverage=80.095; evalue=4.44e-95	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	bdi:100831221	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.647; coverage=80.569; evalue=5.13e-101	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	bdi:100838275	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.0; coverage=79.621; evalue=1.52e-94	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0157500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.778; coverage=81.043; evalue=2.24e-101	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0157700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=80.569; evalue=6.52e-105	UniProtKB/Swiss-Prot DAT 2026 current_release