Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_005182 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:157384381-157386630 (+) |
| Description | Similar to UBP24: Ubiquitin carboxyl-terminal hydrolase 24 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005182 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g30890 |
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.395; coverage=73.253; evalue=1.55e-168; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006914 | autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010506 | regulation of autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016579 | protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.395; coverage=73.253; evalue=1.55e-168; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031647 | regulation of protein stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.395; coverage=73.253; evalue=1.55e-168; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035520 | monoubiquitinated protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.02; coverage=79.242; evalue=2.18e-67; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043124 | negative regulation of canonical NF-kappaB signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045087 | innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.02; coverage=79.242; evalue=2.18e-67; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0062030 | negative regulation of stress granule assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071347 | cellular response to interleukin-1 | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072344 | rescue of stalled cytosolic ribosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.395; coverage=73.253; evalue=1.55e-168; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.02; coverage=79.242; evalue=2.18e-67; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005769 | early endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.395; coverage=73.253; evalue=1.55e-168; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0022626 | cytosolic ribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.02; coverage=79.242; evalue=2.18e-67; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.02; coverage=79.242; evalue=2.18e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002039 | p53 binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004197 | cysteine-type endopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004843 | cysteine-type deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.395; coverage=73.253; evalue=1.55e-168; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044325 | transmembrane transporter binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140678 | molecular function inhibitor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.02; coverage=79.242; evalue=2.18e-67; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G30890 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.395; coverage=73.253; evalue=1.55e-168 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gga:415817 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.427; coverage=79.441; evalue=1.71e-67 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:307905 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.02; coverage=79.242; evalue=2.18e-67 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:380335 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.516; coverage=79.242; evalue=5.39e-67 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:779202 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.761; coverage=79.242; evalue=5.18e-67 | UniProtKB/Swiss-Prot DAT 2026 current_release |