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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_005170
Query referenceOH1004
LocationChr01:157054740-157055947 (-)
DescriptionSimilar to Y14: RNA-binding protein Y14 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005170 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g51510 Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0140500 Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
Uncovering Divergence of Rice Exon Junction Complex Core Heterodimer Gene Duplication Reveals Their Essential Role in Growth, Development, and Reproduction.2014 · DOI: 10.1104/pp.114.237958
Targeting MAGO proteins with a peptide aptamer reinforces their essential roles in multiple rice developmental pathways.2014 · DOI: 10.1111/tpj.12672
Os03g0809900 Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
Uncovering Divergence of Rice Exon Junction Complex Core Heterodimer Gene Duplication Reveals Their Essential Role in Growth, Development, and Reproduction.2014 · DOI: 10.1104/pp.114.237958
Targeting MAGO proteins with a peptide aptamer reinforces their essential roles in multiple rice developmental pathways.2014 · DOI: 10.1111/tpj.12672

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000381regulation of alternative mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.871; coverage=61.386; evalue=1.21e-46; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000398mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.871; coverage=61.386; evalue=1.21e-46; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006417regulation of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010628positive regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051028mRNA transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016604nuclear bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035145exon-exon junction complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071006U2-type catalytic step 1 spliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.871; coverage=61.386; evalue=1.21e-46; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G51510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.542; coverage=95.05; evalue=6.08e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0809900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.545; coverage=76.238; evalue=1.2e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0140500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.118; coverage=67.327; evalue=7.09e-63UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:379595KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.871; coverage=61.386; evalue=2.16e-46UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:399167KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.871; coverage=61.386; evalue=1.21e-46UniProtKB/Swiss-Prot DAT 2026 current_release