Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_004939 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:150602539-150603477 (+) |
| Description | Similar to RGTB1: Geranylgeranyl transferase type-2 subunit beta 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_004939 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g12210 |
May catalyze geranylgeranylation of Rab proteins. |
Arabidopsis RAB geranylgeranyl transferase beta-subunit mutant is constitutively photomorphogenic, and has shoot growth and gravitropic defects.2010 · DOI: 10.1111/j.1365-313x.2010.04172.x
|
At3g12070 |
May catalyze geranylgeranylation of Rab proteins. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009553 | embryo sac development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009960 | endosperm development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010183 | pollen tube guidance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010214 | seed coat development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010315 | auxin export across the plasma membrane | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0018344 | protein geranylgeranylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048316 | seed development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140301 | pollen-stigma interaction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140964 | intracellular auxin homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.516; coverage=98.077; evalue=4.25e-136; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005968 | Rab-protein geranylgeranyltransferase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004663 | Rab geranylgeranyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.516; coverage=98.077; evalue=4.25e-136; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019840 | isoprenoid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.516; coverage=98.077; evalue=4.25e-136; UniProt GO evidence=IDA:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031267 | small GTPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.516; coverage=98.077; evalue=4.25e-136; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G12070 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.077; coverage=100.0; evalue=4.94e-172 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G12210 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.598; coverage=99.679; evalue=2.37e-176 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:533276 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.516; coverage=98.077; evalue=1.31e-135 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:19352 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.19; coverage=98.077; evalue=8.49e-136 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:25533 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.516; coverage=98.077; evalue=4.25e-136 | UniProtKB/Swiss-Prot DAT 2026 current_release |