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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_004280
Query referenceOH1004
LocationChr01:131679070-131680251 (+)
DescriptionSimilar to COP10: Constitutive photomorphogenesis protein 10 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_004280 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g13550 Component of light signal transduction machinery.
Arabidopsis COP10 is a ubiquitin-conjugating enzyme variant that acts together with COP1 and the COP9 signalosome in repressing photomorphogenesis.2002 · DOI: 10.1101/gad.964602
Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes.2004 · DOI: 10.1101/gad.1229504

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000209protein polyubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.665; coverage=98.817; evalue=2.28e-83; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006513protein monoubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006974DNA damage responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.06; coverage=88.166; evalue=8.7e-65; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009585red, far-red light phototransductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.665; coverage=98.817; evalue=2.28e-83; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010099regulation of photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.665; coverage=98.817; evalue=2.28e-83; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010629negative regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032020ISG15-protein conjugationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.06; coverage=88.166; evalue=8.7e-65; UniProt GO evidence=IDA:HGNC-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070534protein K63-linked ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070936protein K48-linked ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070979protein K11-linked ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900087positive regulation of G1/S transition of mitotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.06; coverage=88.166; evalue=8.7e-65; UniProt GO evidence=IGI:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.665; coverage=98.817; evalue=2.28e-83; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.665; coverage=98.817; evalue=2.28e-83; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.732; coverage=88.166; evalue=1.96e-65; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042296ISG15 transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.06; coverage=88.166; evalue=8.7e-65; UniProt GO evidence=IDA:HGNC-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061631ubiquitin conjugating enzyme activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.665; coverage=98.817; evalue=2.28e-83; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G13550KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.665; coverage=98.817; evalue=2.28e-83UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:534349KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.732; coverage=88.166; evalue=1.96e-65UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:10477KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=59.732; coverage=88.166; evalue=1.96e-65UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:7325KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.06; coverage=88.166; evalue=8.7e-65UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:22193KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.732; coverage=88.166; evalue=1.96e-65UniProtKB/Swiss-Prot DAT 2026 current_release