Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_004206`
Query reference	OH1004
Location	Chr01:129142306-129145656 (-)
Description	Similar to NAC068: NAC domain-containing protein 68 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_004206 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08790`	Involved in disease resistance response.	The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02488.x Interaction of the Tobacco mosaic virus replicase protein with a NAC domain transcription factor is associated with the suppression of systemic host defenses.2009 · DOI: 10.1128/jvi.00941-09 ATAF2, a NAC transcription factor, binds to the promoter and regulates NIT2 gene expression involved in auxin biosynthesis.2012 · DOI: 10.1007/s10059-012-0122-2 ATAF2 integrates Arabidopsis brassinosteroid inactivation and seedling photomorphogenesis.2015 · DOI: 10.1242/dev.124347
`At4g27410`	May participate in stress responses and transcriptional regulation of associated genes.	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter.2004 · DOI: 10.1105/tpc.104.022699 Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence.2018 · DOI: 10.1111/nph.15127

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0816100`	Probable transcription factor involved in stress response.	No verified direct reference in this release
`Os03g0815100`	Transcription factor that possesses transactivation activity.	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice.2006 · DOI: 10.1073/pnas.0604882103 The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.2010 · DOI: 10.1007/s00438-010-0557-0
`Os07g0225300`	Probable transcription factor involved in stress response.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.63; coverage=53.56; evalue=1.1e-75; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.63; coverage=53.56; evalue=1.1e-75; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008361	regulation of cell size	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.322; coverage=54.799; evalue=4.57e-68; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009416	response to light stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009611	response to wounding	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009620	response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.322; coverage=54.799; evalue=4.57e-68; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009744	response to sucrose	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009751	response to salicylic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010099	regulation of photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900055	regulation of leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.322; coverage=54.799; evalue=4.57e-68; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901002	positive regulation of response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.63; coverage=53.56; evalue=1.1e-75; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902584	positive regulation of response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.773; coverage=54.489; evalue=4.63e-75; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.63; coverage=53.56; evalue=1.1e-75; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.322; coverage=54.799; evalue=4.57e-68; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.63; coverage=53.56; evalue=1.1e-75; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.773; coverage=54.489; evalue=4.63e-75; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043424	protein histidine kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.773; coverage=54.489; evalue=4.63e-75; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990841	promoter-specific chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.322; coverage=54.799; evalue=4.57e-68; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G27410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.322; coverage=54.799; evalue=4.57e-68	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G08790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.667; coverage=55.728; evalue=1.78e-69	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0816100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.63; coverage=53.56; evalue=1.1e-75	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0815100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.773; coverage=54.489; evalue=4.63e-75	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os07g0225300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.453; coverage=55.418; evalue=4.24e-73	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4334553	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.773; coverage=54.489; evalue=4.63e-75	UniProtKB/Swiss-Prot DAT 2026 current_release