Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_004008 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:121508720-121509739 (-) |
| Description | Similar to RIN4: RPM1-interacting protein 4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_004008 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 13 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g25070 |
Essential regulator of plant defense, which plays a central role in resistance in case of infection by a pathogen. |
RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis.2002 · DOI: 10.1016/s0092-8674(02)00661-x
|
At5g55850 |
Protein NOI4. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002237 | response to molecule of bacterial origin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006468 | protein phosphorylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009624 | response to nematode | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.537; coverage=30.37; evalue=7.21e-09; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009626 | plant-type hypersensitive response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034051 | negative regulation of plant-type hypersensitive response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042742 | defense response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.537; coverage=30.37; evalue=7.21e-09; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0012505 | endomembrane system | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019897 | extrinsic component of plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G25070 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.253; coverage=67.407; evalue=3.03e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G55850 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.537; coverage=30.37; evalue=7.21e-09 | UniProtKB/Swiss-Prot DAT 2026 current_release |