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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_003475
Query referenceOH1004
LocationChr01:80612110-80617041 (-)
DescriptionSimilar to CKL11: Casein kinase 1-like protein 11 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_003475 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g14340 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. No verified direct reference in this release
At3g23340 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. No verified direct reference in this release
At5g43320 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. No verified direct reference in this release
At4g28540 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.
Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules,2008 · DOI: 10.1104/pp.108.129346
Versatile casein kinase 1: multiple locations and functions.2009 · DOI: 10.1104/pp.108.129346

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0622100 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.
Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity.2003 · DOI: 10.1046/j.1365-313x.2003.01866.x
Rice LTG1 is involved in adaptive growth and fitness under low ambient temperature.2014 · DOI: 10.1111/tpj.12487

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001558regulation of cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006897endocytosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007165signal transductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=70.402; coverage=101.502; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009741response to brassinosteroidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=70.402; coverage=101.502; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009826unidimensional cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=70.402; coverage=101.502; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009850auxin metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=70.402; coverage=101.502; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016310phosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043622cortical microtubule organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046777protein autophosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=70.402; coverage=101.502; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051510regulation of unidimensional cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005856cytoskeletonCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.191; coverage=100.858; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012505endomembrane systemCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030054cell junctionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0055028cortical microtubuleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071944cell peripheryCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004674protein serine/threonine kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015631tubulin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0106310protein serine kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0; UniProt GO evidence=IEA:RHEAUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G23340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.191; coverage=100.858; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G14340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.766; coverage=100.858; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G28540KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.973; coverage=102.361; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G43320KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.897; coverage=104.077; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0622100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=70.402; coverage=101.502; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release