Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_003350`
Query reference	OH1004
Location	Chr01:75739684-75743908 (-)
Description	Similar to JMJ25: Lysine-specific demethylase JMJ25 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_003350 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62310`	May function as histone H3 lysine demethylase and be involved in regulation of gene expression.	No verified direct reference in this release
`At1g11950`	May function as histone H3 lysine demethylase and be involved in regulation of gene expression.	No verified direct reference in this release
`At4g00990`	Histone demethylase that demethylates 'Lys-9' (H3K9me) of histone H3 with a specific activity for H3K9me1 and H3K9me2.	JMJ27, an Arabidopsis H3K9 histone demethylase, modulates defense against Pseudomonas syringae and flowering time.2017 · DOI: 10.1111/tpj.13623 JMJ27-mediated histone H3K9 demethylation positively regulates drought-stress responses in Arabidopsis.2021 · DOI: 10.1111/nph.17593
`At3g07610`	Histone demethylase that demethylates 'Lys-9' (H3K9me) of histone H3 with a specific activity for H3K9me2 and H3K9me1.	Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana.2008 · DOI: 10.1126/science.1150987 An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites.2009 · DOI: 10.1038/emboj.2009.59 Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome.2010 · DOI: 10.1038/emboj.2010.227 DNA methylation in an intron of the IBM1 histone demethylase gene stabilizes chromatin modification patterns.2012 · DOI: 10.1038/emboj.2012.141 IBM1, a JmjC domain-containing histone demethylase, is involved in the regulation of RNA-directed DNA methylation through the epigenetic control of RDR2 and DCL3 expression in Arabidopsis.2012 · DOI: 10.1093/nar/gks647 SHOOT GROWTH1 maintains Arabidopsis epigenomes by regulating IBM1.2014 · DOI: 10.1371/journal.pone.0084687 Demethylation of ERECTA receptor genes by IBM1 histone demethylase affects stomatal development.2016 · DOI: 10.1242/dev.129932 Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis.2021 · DOI: 10.1038/s41467-021-22995-3 The arabidopsis GyraseB3 contributes to transposon silencing by promoting histone deacetylation.2025 · DOI: 10.1093/nar/gkaf985
`At1g09060`	May bind histone H3 but appears to lack demethylase activity because it cannot bind Fe²⁺.	JMJ24 binds to RDR2 and is required for the basal level transcription of silenced loci in Arabidopsis.2015 · DOI: 10.1111/tpj.12924 JMJ24 targets CHROMOMETHYLASE3 for proteasomal degradation in Arabidopsis.2016 · DOI: 10.1101/gad.274647.115 A JUMONJI Protein with E3 Ligase and Histone H3 Binding Activities Affects Transposon Silencing in Arabidopsis.2016 · DOI: 10.1104/pp.15.01688

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.348; coverage=50.168; evalue=7.5e-145; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009617	response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.348; coverage=50.168; evalue=7.5e-145; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010440	stomatal lineage progression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.348; coverage=50.168; evalue=7.5e-145; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.348; coverage=50.168; evalue=7.5e-145; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.348; coverage=50.168; evalue=7.5e-145; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080188	gene silencing by siRNA-directed DNA methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.348; coverage=50.168; evalue=7.5e-145; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090333	regulation of stomatal closure	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902584	positive regulation of response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000028	regulation of photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000039	regulation of trichome morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000118	histone deacetylase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048188	Set1C/COMPASS complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.934; coverage=74.356; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003712	transcription coregulator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016491	oxidoreductase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031490	chromatin DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032454	histone H3K9 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140683	histone H3K9me/H3K9me2 demethylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G11950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.934; coverage=74.356; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G62310	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.747; coverage=74.02; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G07610	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.348; coverage=50.168; evalue=7.5e-145	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G00990	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.956; coverage=81.075; evalue=6.87e-175	UniProtKB/Swiss-Prot DAT 2026 current_release