Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_003244`
Query reference	OH1004
Location	Chr01:71754200-71755706 (+)
Description	Similar to GAMYB: Transcription factor GAMYB (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_003244 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32460`	Transcription activator.	ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination.2007 · DOI: 10.1111/j.1365-313x.2006.02980.x The microRNA159-regulated GAMYB-like genes inhibit growth and promote programmed cell death in Arabidopsis.2010 · DOI: 10.1104/pp.110.160630 MYB97, MYB101 and MYB120 function as male factors that control pollen tube-synergid interaction in Arabidopsis thaliana fertilization.2013 · DOI: 10.1371/journal.pgen.1003933 The over-expression of two transcription factors, ABS5/bHLH30 and ABS7/MYB101, leads to upwardly curly leaves.2014 · DOI: 10.1371/journal.pone.0107637
`At3g11440`	Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter.	The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development.2005 · DOI: 10.1105/tpc.104.027920 The microRNA159-regulated GAMYB-like genes inhibit growth and promote programmed cell death in Arabidopsis.2010 · DOI: 10.1104/pp.110.160630
`At5g06100`	Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter.	The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development.2005 · DOI: 10.1105/tpc.104.027920 ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination.2007 · DOI: 10.1111/j.1365-313x.2006.02980.x The microRNA159-regulated GAMYB-like genes inhibit growth and promote programmed cell death in Arabidopsis.2010 · DOI: 10.1104/pp.110.160630

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0812000`	Transcriptional activator of gibberellin-dependent alpha- amylase expression in aleurone cells.	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development.2004 · DOI: 10.1105/tpc.017327 Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB.2009 · DOI: 10.1105/tpc.108.062935 Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.2010 · DOI: 10.1111/j.1744-7909.2010.00959.x Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.2012 · DOI: 10.1105/tpc.112.097741
`UniProt: A2WW87`	Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008285	negative regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.103; coverage=35.698; evalue=4.55e-62; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.171; coverage=28.146; evalue=2.7e-61; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009735	response to cytokinin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.171; coverage=28.146; evalue=2.7e-61; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009739	response to gibberellin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009740	gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043068	positive regulation of programmed cell death	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045926	negative regulation of growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.103; coverage=35.698; evalue=4.55e-62; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048235	pollen sperm cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048653	anther development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048655	anther wall tapetum morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.103; coverage=35.698; evalue=4.55e-62; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080092	regulation of pollen tube growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901371	regulation of leaf morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990019	protein storage vacuole organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090406	pollen tube	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.103; coverage=35.698; evalue=4.55e-62; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.171; coverage=28.146; evalue=2.7e-61; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G32460	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.36; coverage=40.732; evalue=2.47e-67	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G11440	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.103; coverage=35.698; evalue=4.55e-62	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G06100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.171; coverage=28.146; evalue=2.7e-61	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0812000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.493; coverage=80.778; evalue=1.82e-69	UniProtKB/Swiss-Prot DAT 2026 current_release