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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_002935
Query referenceOH1004
LocationChr01:61713167-61717444 (+)
DescriptionSimilar to HPT1: Homogentisate phytyltransferase 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002935 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g18950 Involved in the synthesis of tocopherol (vitamin E).
Isolation and characterization of homogentisate phytyltransferase genes from Synechocystis sp. PCC 6803 and Arabidopsis.2002 · DOI: 10.1104/pp.010747
Homogentisate phytyltransferase activity is limiting for tocopherol biosynthesis in Arabidopsis.2003 · DOI: 10.1104/pp.015222
Seed-specific overexpression of antioxidant genes in Arabidopsis enhances oxidative stress tolerance during germination and early seedling growth.2010 · DOI: 10.1111/j.1467-7652.2010.00509.x
Vitamin E biosynthesis: functional characterization of the monocot homogentisate geranylgeranyl transferase.2011 · DOI: 10.1111/j.1365-313x.2010.04417.x

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0658900 Involved in the synthesis of tocopherol (vitamin E). No verified direct reference in this release
Os06g0646900 Involved in the synthesis of tocotrienol (vitamin E).
Antioxidant activity and inhibition of lipid peroxidation in germinating seeds of transgenic soybean expressing OsHGGT.2011 · DOI: 10.1021/jf104012z

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006636unsaturated fatty acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009266response to temperature stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009915phloem sucrose loadingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010189vitamin E biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031347regulation of defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042362fat-soluble vitamin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=TAS:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071555cell wall organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.03; coverage=72.848; evalue=4.85e-166; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004659prenyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IDA:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010176homogentisate phytyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010356homogentisate geranylgeranyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=51.374; coverage=80.353; evalue=1.64e-117; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G18950KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=83.223; evalue=2.86e-173UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os06g0646900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.874; coverage=76.821; evalue=3.54e-116UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os06g0658900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.03; coverage=72.848; evalue=4.85e-166UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4341727KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=73.03; coverage=72.848; evalue=4.85e-166UniProtKB/Swiss-Prot DAT 2026 current_release