Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_002778 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:58197520-58199593 (-) |
| Description | Similar to Cysteine synthase%2C chloroplastic/chromoplastic (Solanum tuberosum OX%3D4113) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_002778 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 26 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
No hit for this species in the current source table.
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os06g0602400 |
DEAD-box ATP-dependent RNA helicase 52A. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.056; coverage=26.97; evalue=7.55e-24; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000390 | spliceosomal complex disassembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.609; coverage=27.879; evalue=3.07e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.056; coverage=26.97; evalue=7.55e-24; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006369 | termination of RNA polymerase II transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.933; coverage=26.97; evalue=2.69e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006535 | L-cysteine biosynthetic process from L-serine | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=31.818; evalue=2.2e-28; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009567 | double fertilization forming a zygote and endosperm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=31.818; evalue=2.2e-28; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009860 | pollen tube growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=31.818; evalue=2.2e-28; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.933; coverage=26.97; evalue=2.69e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901195 | positive regulation of formation of translation preinitiation complex | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.609; coverage=27.879; evalue=3.07e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.791; coverage=26.061; evalue=5.61e-26; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=31.818; evalue=2.2e-28; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009509 | chromoplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=31.818; evalue=2.2e-28; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=31.818; evalue=2.2e-28; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010494 | cytoplasmic stress granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.609; coverage=27.879; evalue=3.07e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002151 | G-quadruplex RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.933; coverage=26.97; evalue=2.69e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.056; coverage=26.97; evalue=7.55e-24; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003724 | RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.791; coverage=26.061; evalue=5.61e-26; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.791; coverage=26.061; evalue=5.61e-26; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003743 | translation initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.609; coverage=27.879; evalue=3.07e-23; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004124 | cysteine synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.0; coverage=31.818; evalue=2.2e-28; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.791; coverage=26.061; evalue=5.61e-26; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.791; coverage=26.061; evalue=5.61e-26; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030515 | snoRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.933; coverage=26.97; evalue=2.69e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031370 | eukaryotic initiation factor 4G binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.609; coverage=27.879; evalue=3.07e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033592 | RNA strand annealing activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.609; coverage=27.879; evalue=3.07e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051880 | G-quadruplex DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.933; coverage=26.97; evalue=2.69e-23; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ago:AGOS_ADL273C | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.609; coverage=27.879; evalue=3.07e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dha:DEHA2A12958g | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.933; coverage=26.97; evalue=2.69e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os06g0602400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.791; coverage=26.061; evalue=5.61e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pgu:PGUG_04031 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.056; coverage=26.97; evalue=7.55e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release |