Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_002704 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:55473298-55475507 (-) |
| Description | Similar to ARP6: Actin-related protein 6 (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_002704 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g33520 |
Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. |
The nuclear actin-related protein ARP6 is a pleiotropic developmental regulator required for the maintenance of FLOWERING LOCUS C expression and repression of flowering in Arabidopsis.2005 · DOI: 10.1105/tpc.105.035196 SUPPRESSOR OF FRIGIDA3 encodes a nuclear ACTIN-RELATED PROTEIN6 required for floral repression in Arabidopsis.2005 · DOI: 10.1105/tpc.105.035485 EARLY IN SHORT DAYS 1 (ESD1) encodes ACTIN-RELATED PROTEIN 6 (AtARP6), a putative component of chromatin remodelling complexes that positively regulates FLC accumulation in Arabidopsis.2006 · DOI: 10.1242/dev.02301 Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z.2007 · DOI: 10.1105/tpc.106.048447
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0269900 |
Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes by chromatin remodeling. | No verified direct reference in this release |
UniProt: A2WNB0 |
Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes by chromatin remodeling. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.31; coverage=98.84; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.377; coverage=98.376; evalue=1.28e-92; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006952 | defense response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.31; coverage=98.84; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006970 | response to osmotic stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007000 | nucleolus organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.377; coverage=98.376; evalue=1.28e-92; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009266 | response to temperature stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009910 | negative regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016479 | negative regulation of transcription by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.377; coverage=98.376; evalue=1.28e-92; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030029 | actin filament-based process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045943 | positive regulation of transcription by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.377; coverage=98.376; evalue=1.28e-92; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902275 | regulation of chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904159 | megasporocyte differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000812 | Swr1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.31; coverage=98.84; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.31; coverage=98.84; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.377; coverage=98.376; evalue=1.28e-92; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005856 | cytoskeleton | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.377; coverage=98.376; evalue=1.28e-92; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005200 | structural constituent of cytoskeleton | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031491 | nucleosome binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.31; coverage=98.84; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G33520 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.561; coverage=99.304; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0269900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.31; coverage=98.84; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:64431 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.906; coverage=98.376; evalue=3.12e-91 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:67019 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.377; coverage=98.376; evalue=1.28e-92 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4326270 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.31; coverage=98.84; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |