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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_002565
Query referenceOH1004
LocationChr01:51730200-51734390 (+)
DescriptionSimilar to GNL2: ARF guanine-nucleotide exchange factor GNL2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002565 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 43 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19610 Activates the ARF proteins by exchanging bound GDP for free GTP.
GNOM-LIKE 2, encoding an adenosine diphosphate-ribosylation factor-guanine nucleotide exchange factor protein homologous to GNOM and GNL1, is essential for pollen germination in Arabidopsis.2009 · DOI: 10.1111/j.1744-7909.2009.00858.x
At1g13980 Activates the ARF proteins by exchanging bound GDP for free GTP.
Cell wall alterations in the arabidopsis emb30 mutant.2000 · DOI: 10.1105/tpc.12.11.2047
EMB30 is essential for normal cell division, cell expansion, and cell adhesion in Arabidopsis and encodes a protein that has similarity to Sec7.1994 · DOI: 10.1016/0092-8674(94)90444-8
At5g39500 Activates the ARF proteins by exchanging bound GDP for free GTP.
Functional diversification of closely related ARF-GEFs in protein secretion and recycling.2007 · DOI: 10.1038/nature05967
An ARF-GEF acting at the Golgi and in selective endocytosis in polarized plant cells.2007 · DOI: 10.1038/nature06023
GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 are required for maintenance of endoplasmic reticulum morphology in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.109.068270

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000911cytokinesis by cell plate formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006890retrograde vesicle-mediated transport, Golgi to endoplasmic reticulumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.101; coverage=103.295; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006897endocytosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007005mitochondrion organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74; UniProt GO evidence=IMP:WormBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007029endoplasmic reticulum organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74; UniProt GO evidence=IMP:WormBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007030Golgi organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007155cell adhesionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009826unidimensional cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009846pollen germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009880embryonic pattern specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009942longitudinal axis specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010087phloem or xylem histogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010274hydrotropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010311lateral root formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010540basipetal auxin transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016192vesicle-mediated transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016197endosomal transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74; UniProt GO evidence=IMP:WormBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032012regulation of ARF protein signal transductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032509endosome transport via multivesicular body sorting pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046903secretionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74; UniProt GO evidence=IMP:WormBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048209regulation of vesicle targeting, to, from or within GolgiBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048765root hair cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070417cellular response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071555cell wall organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080119ER body organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.101; coverage=103.295; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000137Golgi cis cisternaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74; UniProt GO evidence=IDA:WormBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000139Golgi membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.101; coverage=103.295; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005768endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005793endoplasmic reticulum-Golgi intermediate compartmentCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.101; coverage=103.295; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010008endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070971endoplasmic reticulum exit siteCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74; UniProt GO evidence=IDA:WormBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090406pollen tubeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005085guanyl-nucleotide exchange factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G13980KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.098; coverage=102.722; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G19610KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.994; coverage=99.14; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G39500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.101; coverage=103.295; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcel:CELE_C24H11.7KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.554; coverage=67.837; evalue=1.54e-74UniProtKB/Swiss-Prot DAT 2026 current_release