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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_002345
Query referenceOH1004
LocationChr01:46715949-46718597 (+)
DescriptionSimilar to RPA1A: Replication protein A 70 kDa DNA-binding subunit A (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002345 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g06510 Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.
Replication protein A (AtRPA1a) is required for class I crossover formation but is dispensable for meiotic DNA break repair.2009 · DOI: 10.1038/emboj.2008.295
Arabidopsis replication protein A 70a is required for DNA damage response and telomere length homeostasis.2009 · DOI: 10.1093/pcp/pcp140
At4g19130 Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. No verified direct reference in this release
At5g45400 Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0776800 Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.
Two types of replication protein A in seed plants.2005 · DOI: 10.1111/j.1742-4658.2005.04719.x
Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice.2009 · DOI: 10.1104/pp.109.142877
Os05g0111000 Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000724double-strand break repair via homologous recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006260DNA replicationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.954; coverage=101.413; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006289nucleotide-excision repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007004telomere maintenance via telomeraseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007131reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007140male meiotic nuclear divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.954; coverage=101.413; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007141male meiosis IBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048232male gamete generationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051026chiasma assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051321meiotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005662DNA replication factor A complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003684damaged DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043047single-stranded telomeric DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G06510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.78; coverage=99.843; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G19130KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.392; coverage=105.338; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G45400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.432; coverage=75.667; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0776800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.954; coverage=101.413; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release