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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_002019
Query referenceOH1004
LocationChr01:39714752-39715866 (+)
DescriptionSimilar to PDF1A: Peptide deformylase 1A%2C chloroplastic (Solanum lycopersicum OX%3D4081)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002019 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g15390 Removes the formyl group from the N-terminal Met of newly synthesized proteins.
Eukaryotic peptide deformylases. Nuclear-encoded and chloroplast-targeted enzymes in Arabidopsis.2001 · DOI: 10.1104/pp.127.1.97
Distinctive features of the two classes of eukaryotic peptide deformylases.2001 · DOI: 10.1006/jmbi.2001.5175

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0555800 Removes the formyl group from the N-terminal Met of newly synthesized proteins. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006412translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.158; coverage=100.0; evalue=1.74e-116; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008284positive regulation of cell population proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=62.456; evalue=2.51e-39; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0018206peptidyl-methionine modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=62.456; evalue=2.51e-39; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043687post-translational protein modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=62.456; evalue=2.51e-39; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051604protein maturationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.329; coverage=72.632; evalue=2.3e-110; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.158; coverage=100.0; evalue=1.74e-116; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009505plant-type cell wallCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.329; coverage=72.632; evalue=2.3e-110; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.329; coverage=72.632; evalue=2.3e-110; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.158; coverage=100.0; evalue=1.74e-116; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042586peptide deformylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.158; coverage=100.0; evalue=1.74e-116; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.158; coverage=100.0; evalue=1.74e-116; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G15390KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.329; coverage=72.632; evalue=2.3e-110UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0555800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.769; coverage=68.421; evalue=2.27e-96UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGgvi:glr1729KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.857; coverage=61.404; evalue=9.82e-49UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:68023KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=62.456; evalue=2.51e-39UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:544225KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.158; coverage=100.0; evalue=1.74e-116UniProtKB/Swiss-Prot DAT 2026 current_release