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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_001820
Query referenceOH1004
LocationChr01:34244773-34248324 (-)
DescriptionSimilar to ADA2: Transcriptional adapter ADA2 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001820 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 33 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g07740 Required for the function of some acidic activation domains, which activate transcription from a distant site. No verified direct reference in this release
At4g16420 Required for the function of some acidic activation domains, which activate transcription from a distant site.
Disruption mutations of ADA2b and GCN5 transcriptional adaptor genes dramatically affect Arabidopsis growth, development, and gene expression.2003 · DOI: 10.1105/tpc.007922
PROPORZ1, a putative Arabidopsis transcriptional adaptor protein, mediates auxin and cytokinin signals in the control of cell proliferation.2003 · DOI: 10.1016/s0960-9822(03)00327-0
Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses.2011 · DOI: 10.1007/s00425-010-1337-0

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0750800 Required for the function of some acidic activation domains, which activate transcription from a distant site (By similarity).
Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.2017 · DOI: 10.1105/tpc.16.00908

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000183rDNA heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IMP:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006325chromatin organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IDA:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006338chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.996; coverage=101.993; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009631cold acclimationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.707; coverage=100.181; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009733response to auxinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.707; coverage=100.181; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009735response to cytokininBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.707; coverage=100.181; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010520regulation of reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010811positive regulation of cell-substrate adhesionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IMP:CGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030447filamentous growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IMP:CGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031509subtelomeric heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IMP:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042127regulation of cell population proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.707; coverage=100.181; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043709cell adhesion involved in single-species biofilm formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IMP:CGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044114development of symbiont in hostBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IMP:CGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044182filamentous growth of a population of unicellular organismsBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IMP:CGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071466cellular response to xenobiotic stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IMP:CGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071470cellular response to osmotic stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900189positive regulation of cell adhesion involved in single-species biofilm formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IMP:CGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990414replication-born double-strand break repair via sister chromatid exchangeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IMP:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000124SAGA complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IDA:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000781chromosome, telomeric regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IEA:GOCUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046695SLIK (SAGA-like) complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IDA:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070461SAGA-type complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140671ADA complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IDA:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001786phosphatidylserine bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51; UniProt GO evidence=IDA:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003713transcription coactivator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35; UniProt GO evidence=IDA:CGDUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G07740KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.996; coverage=101.993; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G16420KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.707; coverage=100.181; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcal:CAALFM_C110860CAKEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=22.101; evalue=7.74e-35UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0750800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.541; coverage=101.812; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsce:YDR448WKEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.877; coverage=91.667; evalue=4.25e-51UniProtKB/Swiss-Prot DAT 2026 current_release