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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_001451
Query referenceOH1004
LocationChr01:27111534-27115049 (-)
DescriptionSimilar to EXT3: Extensin-3 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001451 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g21310 Structural component which strengthens the primary cell wall.
Characterization of four extensin genes in Arabidopsis thaliana by differential gene expression under stress and non-stress conditions.2001 · DOI: 10.1093/dnares/8.3.115
Self-assembly of the plant cell wall requires an extensin scaffold.2008 · DOI: 10.1073/pnas.0711980105

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009664plant-type cell wall organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.089; coverage=46.384; evalue=4.57e-07; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010944negative regulation of transcription by competitive promoter bindingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031571mitotic G1 DNA damage checkpoint signalingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0033629negative regulation of cell adhesion mediated by integrinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043484regulation of RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=21.951; coverage=33.884; evalue=8.96e-07; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005615extracellular spaceCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=21.951; coverage=33.884; evalue=8.96e-07; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005796Golgi lumenCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009530primary cell wallCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.089; coverage=46.384; evalue=4.57e-07; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016324apical plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031982vesicleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070062extracellular exosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990904ribonucleoprotein complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=21.951; coverage=33.884; evalue=8.96e-07; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000978RNA polymerase II cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0002039p53 bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IPI:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003712transcription coregulator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08; UniProt GO evidence=IDA:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=21.951; coverage=33.884; evalue=8.96e-07; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005199structural constituent of cell wallMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.089; coverage=46.384; evalue=4.57e-07; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G21310KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.089; coverage=46.384; evalue=4.57e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:389677KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=21.951; coverage=33.884; evalue=8.96e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:4582KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.559; coverage=51.343; evalue=1.87e-08UniProtKB/Swiss-Prot DAT 2026 current_release