Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_001271 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:23290223-23293763 (-) |
| Description | Similar to EXD3: Exonuclease mut-7 homolog (Homo sapiens OX%3D9606) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_001271 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g13870 |
Exonuclease that digests recessed strands of DNA duplexes in the 3' to 5' direction but hardly single-stranded DNA or blunt-ended duplexes. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006139 | nucleobase-containing compound metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.203; coverage=27.189; evalue=1.78e-15; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010526 | transposable element silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.954; coverage=40.246; evalue=9.8e-10; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016441 | post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13; UniProt GO evidence=IMP:WormBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035194 | regulatory ncRNA-mediated post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13; UniProt GO evidence=IMP:WormBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035196 | miRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.954; coverage=40.246; evalue=9.8e-10; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044747 | pre-miRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13; UniProt GO evidence=ISS:WormBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13; UniProt GO evidence=IDA:WormBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13; UniProt GO evidence=IDA:WormBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990633 | mutator focus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13; UniProt GO evidence=IDA:WormBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.954; coverage=40.246; evalue=9.8e-10; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000175 | 3'-5'-RNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.954; coverage=40.246; evalue=9.8e-10; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.203; coverage=27.189; evalue=1.78e-15; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.646; coverage=24.27; evalue=3.63e-12; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008408 | 3'-5' exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.203; coverage=27.189; evalue=1.78e-15; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044748 | 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13; UniProt GO evidence=ISS:WormBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.203; coverage=27.189; evalue=1.78e-15; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | aag:5579811 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.586; coverage=26.728; evalue=3.14e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G13870 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.646; coverage=24.27; evalue=3.63e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cel:CELE_ZK1098.8 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.825; coverage=26.267; evalue=7.88e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG9247 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.954; coverage=40.246; evalue=9.8e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:54932 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.203; coverage=27.189; evalue=1.78e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release |