Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_000873`
Query reference	OH1004
Location	Chr01:16000880-16009297 (-)
Description	Similar to PIF1: Transcription factor PIF1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000873 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 39 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20180`	Transcription activator.	SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5.2008 · DOI: 10.1105/tpc.108.058859
`At4g28790`	Transcription factor bHLH23.	No verified direct reference in this release
`At4g28800`	Putative transcription factor bHLH056.	No verified direct reference in this release
`At1g09530`	Transcription factor acting in the phytochrome signaling pathway.	PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings.2013 · DOI: 10.1105/tpc.113.109710 Coordinated Regulation of Hypocotyl Cell Elongation by Light and Ethylene through a Microtubule Destabilizing Protein.2018 · DOI: 10.1104/pp.17.01109 Submergence stress-induced hypocotyl elongation through ethylene signaling-mediated regulation of cortical microtubules in Arabidopsis.2020 · DOI: 10.1093/jxb/erz453 PHYTOCHROME INTERACTING FACTOR8 Inhibits Phytochrome A-Mediated Far-Red Light Responses in Arabidopsis.2020 · DOI: 10.1105/tpc.19.00515

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0782500`	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction.	Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.2007 · DOI: 10.1271/bbb.60643 Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.2012 · DOI: 10.1073/pnas.1207324109

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006783	heme biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007165	signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009408	response to heat	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009585	red, far-red light phototransduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009639	response to red or far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009686	gibberellin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009704	de-etiolation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009740	gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009826	unidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009959	negative gravitropism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010017	red or far-red light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010029	regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010099	regulation of photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010100	negative regulation of photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010161	red light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010187	negative regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015995	chlorophyll biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031539	positive regulation of anthocyanin metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042548	regulation of photosynthesis, light reaction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=65.686; coverage=26.842; evalue=1.19e-30; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080006	internode patterning	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=65.686; coverage=26.842; evalue=1.19e-30; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090229	negative regulation of red or far-red light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=65.686; coverage=26.842; evalue=1.19e-30; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902074	response to salt	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1905421	regulation of plant organ morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990785	response to water-immersion restraint stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010313	phytochrome binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G09530	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G20180	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G28790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.598; coverage=96.842; evalue=1.05e-42	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0782500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=65.686; coverage=26.842; evalue=1.19e-30	UniProtKB/Swiss-Prot DAT 2026 current_release