Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_000348 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:6473935-6475806 (-) |
| Description | Similar to IDM1: Increased DNA methylation 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_000348 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 58 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g14980 |
Histone H3 acetyltransferase that binds methylated DNA at chromatin sites lacking histone H3K4 di- or trimethylation and catalyzes H3K18 and H3K23 acetylation. |
A histone acetyltransferase regulates active DNA demethylation in Arabidopsis.2012 · DOI: 10.1126/science.1219416
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000724 | double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006366 | transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.191; coverage=7.544; evalue=1.07e-07; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007064 | mitotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008285 | negative regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.191; coverage=7.544; evalue=1.07e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010629 | negative regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015671 | oxygen transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.191; coverage=7.544; evalue=1.1e-07; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030261 | chromosome condensation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034728 | nucleosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035092 | sperm DNA condensation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.191; coverage=7.544; evalue=1.07e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042659 | regulation of cell fate specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045595 | regulation of cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.191; coverage=7.544; evalue=1.07e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IGI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051276 | chromosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072553 | terminal button organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080188 | gene silencing by siRNA-directed DNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141006 | transposable element silencing by piRNA-mediated heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000736 | regulation of stem cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000781 | chromosome, telomeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000791 | euchromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000792 | heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.191; coverage=7.544; evalue=1.07e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005700 | polytene chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005813 | centrosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=HDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016581 | NuRD complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=ISS:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.191; coverage=7.544; evalue=1.07e-07; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032993 | protein-DNA complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.191; coverage=7.544; evalue=1.1e-07; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090575 | RNA polymerase II transcription regulator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IDA:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090734 | site of DNA damage | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001221 | transcription coregulator binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IPI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003714 | transcription corepressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004402 | histone acetyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010385 | double-stranded methylated DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042393 | histone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042826 | histone deacetylase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043993 | histone H3K18 acetyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061628 | histone H3K27me3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.191; coverage=7.544; evalue=1.07e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061629 | RNA polymerase II-specific DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07; UniProt GO evidence=IPI:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140297 | DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.191; coverage=7.544; evalue=1.1e-07; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140658 | ATP-dependent chromatin remodeler activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140750 | nucleosome array spacer activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G14980 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=32.787; coverage=88.122; evalue=6.2e-74 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG8103 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.191; coverage=7.544; evalue=1.65e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:1108 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.191; coverage=7.544; evalue=1.02e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:107932 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.191; coverage=7.544; evalue=1.1e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release |