query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation TkA05G025860 TkA05G025860 function TkA05G025860 Similar to VIP2: Probable NOT transcription complex subunit VIP2 (Fragment) (Nicotiana benthamiana OX%3D4100) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0000122 negative regulation of transcription by RNA polymerase II biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.549; coverage=100.91; evalue=0.0; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.313; coverage=93.171; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0006355 regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.313; coverage=93.171; evalue=0.0; UniProt GO evidence=ISS:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0006357 regulation of transcription by RNA polymerase II biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=NAS:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0006417 regulation of translation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0015074 DNA integration biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.313; coverage=93.171; evalue=0.0; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0031047 regulatory ncRNA-mediated gene silencing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0033147 negative regulation of intracellular estrogen receptor signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:2000036 regulation of stem cell population maintenance biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0000932 P-body cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.549; coverage=100.91; evalue=0.0; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.313; coverage=93.171; evalue=0.0; UniProt GO evidence=ISS:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0005654 nucleoplasm cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.304; coverage=27.466; evalue=7.5e-38; UniProt GO evidence=ISO:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0005737 cytoplasm cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0005829 cytosol cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=TAS:Reactome UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0005886 plasma membrane cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.304; coverage=27.466; evalue=7.5e-38; UniProt GO evidence=ISO:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0009507 chloroplast cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.549; coverage=100.91; evalue=0.0; UniProt GO evidence=ISM:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0016020 membrane cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=HDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0030014 CCR4-NOT complex cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0030015 CCR4-NOT core complex cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.313; coverage=93.171; evalue=0.0; UniProt GO evidence=IEA:InterPro UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0001222 transcription corepressor binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0003712 transcription coregulator activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38; UniProt GO evidence=TAS:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0003729 mRNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.549; coverage=100.91; evalue=0.0; UniProt GO evidence=HDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 GO GO:0004535 poly(A)-specific ribonuclease activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.304; coverage=27.466; evalue=7.5e-38; UniProt GO evidence=IEA:Ensembl UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 KEGG ath:AT5G59710 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.549; coverage=100.91; evalue=0.0 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 KEGG hsa:4848 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.304; coverage=27.466; evalue=5.31e-38 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 KEGG mmu:72068 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.304; coverage=27.466; evalue=7.5e-38 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_036479 GCA_047496595.1_OSU_TarKok_2.0 many_to_one True TkA05G025860 TkA05G025860 organism_homology Q9LU41 sp|Q9LU41|ACA9_ARATH Calcium-transporting ATPase 9, plasma membrane-type Arabidopsis thaliana identity=61.5; coverage=45.882; evalue=4.97e-21; rank=3 TK1151 Swiss-Prot homology; source_gene=TkA05G025860; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA05G025860 False TkA05G025860 TkA05G025860 organism_homology Q7X8B5 sp|Q7X8B5|ACA5_ORYSJ Calcium-transporting ATPase 5, plasma membrane-type Oryza sativa subsp. japonica identity=61.5; coverage=45.882; evalue=3.65e-21; rank=2 TK1151 Swiss-Prot homology; source_gene=TkA05G025860; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA05G025860 False TkA05G025860 TkA05G025860 reference_gene_function At3g21180 This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles. Arabidopsis No verified direct reference in this release TkA05G025860 TkA05G025860 reference_gene_function At5g59710 Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression. Arabidopsis No verified direct reference in this release TkA05G025860 TkA05G025860 reference_gene_function At4g29900 This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into the endoplasmic reticulum. Arabidopsis No verified direct reference in this release TkA05G025860 TkA05G025860 reference_gene_literature At3g24430 Required for photosystem I (PSI) biosynthesis and assembly. Arabidopsis A novel protein for photosystem I biogenesis.; PMID=14645254; DOI=10.1074/jbc.m309246200 https://pubmed.ncbi.nlm.nih.gov/14645254/ TkA05G025860 TkA05G025860 reference_gene_literature At3g24430 Required for photosystem I (PSI) biosynthesis and assembly. Arabidopsis The universally conserved HCF101 protein is involved in assembly of [4Fe-4S]-cluster-containing complexes in Arabidopsis thaliana chloroplasts.; PMID=14690502; DOI=10.1046/j.1365-313x.2003.01952.x https://pubmed.ncbi.nlm.nih.gov/14690502/ TkA05G025860 TkA05G025860 reference_gene_function Os04g0605500 This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles (By similarity). Rice No verified direct reference in this release TkA05G025860 TkA05G025860 reference_gene_function Os01g0719700 Required for photosystem I (PSI) biosynthesis and assembly. Rice No verified direct reference in this release