query	gene_id	record_type	id	name	namespace_or_position	evidence	source	query_reference	annotation_reference	annotation_gene_id	annotation_assembly	mapping_category	mapped_annotation
TkA04G506630	TkA04G506630	function	TkA04G506630	Similar to UBP17: Ubiquitin carboxyl-terminal hydrolase 17 (Arabidopsis thaliana OX%3D3702)		GFF-derived	GCA_047496595.1_OSU_TarKok_2.0	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0006508	proteolysis	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.69; coverage=81.983; evalue=4.88e-178; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0009651	response to salt stress	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0009908	flower development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0010154	fruit development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.271; coverage=85.973; evalue=9.58e-138; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0016579	protein deubiquitination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.69; coverage=81.983; evalue=4.88e-178; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0031647	regulation of protein stability	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.69; coverage=81.983; evalue=4.88e-178; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0048364	root development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0048366	leaf development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0048367	shoot system development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0051301	cell division	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:1901000	regulation of response to salt stress	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0005576	extracellular region	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0005634	nucleus	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.69; coverage=81.983; evalue=4.88e-178; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0005737	cytoplasm	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.271; coverage=85.973; evalue=9.58e-138; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0005829	cytosol	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.69; coverage=81.983; evalue=4.88e-178; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0016020	membrane	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0004843	cysteine-type deubiquitinase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.69; coverage=81.983; evalue=4.88e-178; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	GO	GO:0008270	zinc ion binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.69; coverage=81.983; evalue=4.88e-178; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	KEGG	ath:AT1G17110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.271; coverage=85.973; evalue=9.58e-138	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	KEGG	ath:AT2G24640	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.564; coverage=52.116; evalue=1.42e-125	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	KEGG	ath:AT4G24560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.963; coverage=52.721; evalue=2.25e-154	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	KEGG	ath:AT5G65450	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.69; coverage=81.983; evalue=4.88e-178	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039137	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA04G506630	TkA04G506630	organism_homology	Q9FKP5	sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17	Arabidopsis thaliana	identity=45.0; coverage=85.694; evalue=7.19e-143; rank=1	TK1151 Swiss-Prot homology; source_gene=TkA04G506630; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA04G506630			False
TkA04G506630	TkA04G506630	organism_homology	Q0E2F9	sp|Q0E2F9|UBP15_ORYSJ Ubiquitin C-terminal hydrolase 15	Oryza sativa subsp. japonica	identity=33.1; coverage=86.25; evalue=4.94e-100; rank=4	TK1151 Swiss-Prot homology; source_gene=TkA04G506630; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA04G506630			False
TkA04G506630	TkA04G506630	reference_gene_function	At5g65450	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	Arabidopsis	No verified direct reference in this release							
TkA04G506630	TkA04G506630	reference_gene_literature	At4g24560	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	Arabidopsis	Ubiquitin-specific protease16 modulates salt tolerance in Arabidopsis by regulating Na(+)/H(+) antiport activity and serine hydroxymethyltransferase stability.; PMID=23232097; DOI=10.1105/tpc.112.106393	https://pubmed.ncbi.nlm.nih.gov/23232097/						
TkA04G506630	TkA04G506630	reference_gene_literature	At4g24560	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	Arabidopsis	UBIQUITIN-SPECIFIC PROTEASE16 interacts with a HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN27 and modulates cadmium tolerance.; PMID=23857362; DOI=10.4161/psb.25680	https://pubmed.ncbi.nlm.nih.gov/23857362/						
TkA04G506630	TkA04G506630	reference_gene_literature	At1g17110	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	Arabidopsis	Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development.; PMID=18485060; DOI=10.1111/j.1365-313x.2008.03557.x	https://pubmed.ncbi.nlm.nih.gov/18485060/						
TkA04G506630	TkA04G506630	reference_gene_literature	At1g17110	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	Arabidopsis	The ubiquitin receptor DA1 regulates seed and organ size by modulating the stability of the ubiquitin-specific protease UBP15/SOD2 in Arabidopsis.; PMID=24585836; DOI=10.1105/tpc.114.122663	https://pubmed.ncbi.nlm.nih.gov/24585836/						
TkA04G506630	TkA04G506630	reference_gene_function	At4g31670	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	Arabidopsis	No verified direct reference in this release							
TkA04G506630	TkA04G506630	reference_gene_literature	Os02g0244300	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	Rice	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice.; PMID=30796160; DOI=10.1104/pp.19.00065	https://pubmed.ncbi.nlm.nih.gov/30796160/