query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation TkA04G394230 TkA04G394230 function TkA04G394230 Similar to Os06g0358800: Ribonuclease 3-like protein 3 (Oryza sativa subsp. japonica OX%3D39947) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0000911 cytokinesis by cell plate formation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0006364 rRNA processing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.608; coverage=100.0; evalue=2.92e-49; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0006396 RNA processing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=ISS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0009616 RNAi-mediated antiviral immune response biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0009880 embryonic pattern specification biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0009908 flower development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0010228 vegetative to reproductive phase transition of meristem biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0010267 ta-siRNA processing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:FlyBase UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0010599 lsiRNA processing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0030422 siRNA processing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=91.765; evalue=7.34e-61; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0031053 primary miRNA processing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0035196 miRNA processing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.364; coverage=90.588; evalue=2.53e-38; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0035279 miRNA-mediated gene silencing by mRNA destabilization biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0048317 seed morphogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:2000034 regulation of seed maturation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=91.765; evalue=7.34e-61; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0005737 cytoplasm cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=91.765; evalue=7.34e-61; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0009507 chloroplast cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.608; coverage=100.0; evalue=2.92e-49; UniProt GO evidence=ISM:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0010445 nuclear dicing body cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0003677 DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IDA:DisProt UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0003723 RNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=91.765; evalue=7.34e-61; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0003725 double-stranded RNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0004386 helicase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0004525 ribonuclease III activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=91.765; evalue=7.34e-61; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0005524 ATP binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 GO GO:0046872 metal ion binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=91.765; evalue=7.34e-61; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 KEGG ath:AT1G01040 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.714; coverage=87.843; evalue=1.19e-39 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 KEGG ath:AT3G20420 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.608; coverage=100.0; evalue=2.92e-49 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 KEGG dosa:Os03g0121800 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.364; coverage=90.588; evalue=2.53e-38 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 KEGG dosa:Os05g0271300 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.865; coverage=92.941; evalue=7.84e-47 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 KEGG dosa:Os06g0358800 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=91.765; evalue=7.34e-61 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_038131 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA04G394230 TkA04G394230 organism_homology Q9LTQ0 sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2 Arabidopsis thaliana identity=40.8; coverage=89.231; evalue=3.64e-46; rank=2 TK1151 Swiss-Prot homology; source_gene=TkA04G394230; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA04G394230 False TkA04G394230 TkA04G394230 organism_homology Q69KJ0 sp|Q69KJ0|RTL3_ORYSJ Ribonuclease 3-like protein 3 Oryza sativa subsp. japonica identity=42.3; coverage=87.692; evalue=5.49e-57; rank=1 TK1151 Swiss-Prot homology; source_gene=TkA04G394230; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA04G394230 False TkA04G394230 TkA04G394230 reference_gene_literature At3g20420 Ribonuclease that cleaves double-stranded RNA (dsRNA). Arabidopsis Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3'ETS in Arabidopsis.; PMID=18158302; DOI=10.1093/nar/gkm1130 https://pubmed.ncbi.nlm.nih.gov/18158302/ TkA04G394230 TkA04G394230 reference_gene_literature At3g20420 Ribonuclease that cleaves double-stranded RNA (dsRNA). Arabidopsis An Arabidopsis RNase III-like protein, AtRTL2, cleaves double-stranded RNA in vitro.; PMID=20978817; DOI=10.1007/s10265-010-0382-x https://pubmed.ncbi.nlm.nih.gov/20978817/ TkA04G394230 TkA04G394230 reference_gene_literature At1g01040 Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Arabidopsis Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.; PMID=15821876; DOI=10.1007/s11103-004-6853-5 https://pubmed.ncbi.nlm.nih.gov/15821876/ TkA04G394230 TkA04G394230 reference_gene_literature At1g01040 Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Arabidopsis Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.; PMID=16040244; DOI=10.1016/j.cub.2005.07.024 https://pubmed.ncbi.nlm.nih.gov/16040244/ TkA04G394230 TkA04G394230 reference_gene_literature At1g01040 Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Arabidopsis The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.; PMID=16428603; DOI=10.1261/rna.2146906 https://pubmed.ncbi.nlm.nih.gov/16428603/ TkA04G394230 TkA04G394230 reference_gene_literature At1g01040 Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Arabidopsis A novel class of bacteria-induced small RNAs in Arabidopsis.; PMID=18003861; DOI=10.1101/gad.1595107 https://pubmed.ncbi.nlm.nih.gov/18003861/ TkA04G394230 TkA04G394230 reference_gene_literature At1g01040 Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Arabidopsis The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.; PMID=18632569; DOI=10.1073/pnas.0803356105 https://pubmed.ncbi.nlm.nih.gov/18632569/ TkA04G394230 TkA04G394230 reference_gene_literature At1g01040 Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Arabidopsis Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1.; PMID=18799732; DOI=10.1073/pnas.0805760105 https://pubmed.ncbi.nlm.nih.gov/18799732/ TkA04G394230 TkA04G394230 reference_gene_function Os06g0358800 Cleaves double-stranded RNA (dsRNA). Rice No verified direct reference in this release TkA04G394230 TkA04G394230 reference_gene_literature Os03g0121800 Involved in the RNA silencing pathway. Rice Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice.; PMID=16126864; DOI=10.1104/pp.105.063420 https://pubmed.ncbi.nlm.nih.gov/16126864/ TkA04G394230 TkA04G394230 reference_gene_literature Os03g0121800 Involved in the RNA silencing pathway. Rice Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).; PMID=18353984; DOI=10.1073/pnas.0708743105 https://pubmed.ncbi.nlm.nih.gov/18353984/ TkA04G394230 TkA04G394230 reference_gene_function Os10g0485600 Probably involved in the RNA silencing pathway. Rice No verified direct reference in this release