query	gene_id	record_type	id	name	namespace_or_position	evidence	source	query_reference	annotation_reference	annotation_gene_id	annotation_assembly	mapping_category	mapped_annotation
TkA04G109920	TkA04G109920	function	TkA04G109920	Similar to PRDA1: Protein PEP-RELATED DEVELOPMENT ARRESTED 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)		GFF-derived	GCA_047496595.1_OSU_TarKok_2.0	TK1151	OH1004	LXL04_035764	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G109920	TkA04G109920	GO	GO:0006355	regulation of DNA-templated transcription	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.605; coverage=85.572; evalue=2.71e-27; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035764	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G109920	TkA04G109920	GO	GO:0009658	chloroplast organization	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.605; coverage=85.572; evalue=2.71e-27; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035764	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G109920	TkA04G109920	GO	GO:0009507	chloroplast	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.605; coverage=85.572; evalue=2.71e-27; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035764	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G109920	TkA04G109920	GO	GO:0042644	chloroplast nucleoid	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.605; coverage=85.572; evalue=2.71e-27; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035764	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G109920	TkA04G109920	KEGG	ath:AT5G48470	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.605; coverage=85.572; evalue=2.71e-27	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035764	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G109920	TkA04G109920	KEGG	dosa:Os11g0425300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.655; coverage=57.711; evalue=8.87e-18	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035764	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G109920	TkA04G109920	organism_homology	Q1H5E9	sp|Q1H5E9|PRDA1_ARATH Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic	Arabidopsis thaliana	identity=48.0; coverage=79.688; evalue=1.98e-12; rank=1	TK1151 Swiss-Prot homology; source_gene=TkA04G109920; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA04G109920			False
TkA04G109920	TkA04G109920	organism_homology	Q53K52	sp|Q53K52|PRDA1_ORYSJ Protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic	Oryza sativa subsp. japonica	identity=55.8; coverage=33.594; evalue=1.68e-06; rank=2	TK1151 Swiss-Prot homology; source_gene=TkA04G109920; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA04G109920			False
TkA04G109920	TkA04G109920	reference_gene_literature	At5g48470	Plays an essential role in early steps of chloroplast development.	Arabidopsis	PRDA1, a novel chloroplast nucleoid protein, is required for early chloroplast development and is involved in the regulation of plastid gene expression in Arabidopsis.; PMID=24132784; DOI=10.1093/pcp/pct148	https://pubmed.ncbi.nlm.nih.gov/24132784/						
TkA04G109920	TkA04G109920	reference_gene_function	Os11g0425300	Plays an essential role in early steps of chloroplast development.	Rice	No verified direct reference in this release