query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation TkA04G023960 TkA04G023960 function TkA04G023960 Similar to PIF1: Transcription factor PIF1 (Arabidopsis thaliana OX%3D3702) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0006355 regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0006783 heme biosynthetic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0007165 signal transduction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=TAS:TIGR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009408 response to heat biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009409 response to cold biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009585 red, far-red light phototransduction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009639 response to red or far red light biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009686 gibberellin biosynthetic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009704 de-etiolation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009723 response to ethylene biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009733 response to auxin biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009737 response to abscisic acid biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009740 gibberellic acid mediated signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009826 unidimensional cell growth biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0009959 negative gravitropism biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0010017 red or far-red light signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0010029 regulation of seed germination biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0010099 regulation of photomorphogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0010100 negative regulation of photomorphogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0010161 red light signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0010187 negative regulation of seed germination biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0015995 chlorophyll biosynthetic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0031539 positive regulation of anthocyanin metabolic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0042548 regulation of photosynthesis, light reaction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0045893 positive regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=65.686; coverage=26.842; evalue=1.19e-30; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0080006 internode patterning biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=65.686; coverage=26.842; evalue=1.19e-30; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0090229 negative regulation of red or far-red light signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=65.686; coverage=26.842; evalue=1.19e-30; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:1902074 response to salt biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:1905421 regulation of plant organ morphogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:1990785 response to water-immersion restraint stress biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0000976 transcription cis-regulatory region binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IPI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0003677 DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0003700 DNA-binding transcription factor activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0010313 phytochrome binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0042802 identical protein binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IPI:IntAct UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0043565 sequence-specific DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 GO GO:0046983 protein dimerization activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72; UniProt GO evidence=IEA:InterPro UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 KEGG ath:AT1G09530 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=62.931; coverage=30.526; evalue=2.55e-34 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 KEGG ath:AT2G20180 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.038; coverage=103.947; evalue=5.53e-72 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 KEGG ath:AT4G28790 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.598; coverage=96.842; evalue=1.05e-42 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 KEGG dosa:Os03g0782500 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=65.686; coverage=26.842; evalue=1.19e-30 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_000873 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA04G023960 TkA04G023960 organism_homology Q8GZM7 sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 Arabidopsis thaliana identity=38.1; coverage=98.321; evalue=2.09e-62; rank=1 TK1151 Swiss-Prot homology; source_gene=TkA04G023960; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA04G023960 False TkA04G023960 TkA04G023960 organism_homology Q10CH5 sp|Q10CH5|PIL13_ORYSJ Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 Oryza sativa subsp. japonica identity=58.9; coverage=26.306; evalue=4.44e-31; rank=5 TK1151 Swiss-Prot homology; source_gene=TkA04G023960; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA04G023960 False TkA04G023960 TkA04G023960 reference_gene_literature At2g20180 Transcription activator. Arabidopsis SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5.; PMID=18487351; DOI=10.1105/tpc.108.058859 https://pubmed.ncbi.nlm.nih.gov/18487351/ TkA04G023960 TkA04G023960 reference_gene_function At4g28811 Transcription factor bHLH119. Arabidopsis No verified direct reference in this release TkA04G023960 TkA04G023960 reference_gene_function At4g28800 Putative transcription factor bHLH056. Arabidopsis No verified direct reference in this release TkA04G023960 TkA04G023960 reference_gene_function At4g28790 Transcription factor bHLH23. Arabidopsis No verified direct reference in this release TkA04G023960 TkA04G023960 reference_gene_literature Os03g0782500 Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. Rice Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.; PMID=17485859; DOI=10.1271/bbb.60643 https://pubmed.ncbi.nlm.nih.gov/17485859/ TkA04G023960 TkA04G023960 reference_gene_literature Os03g0782500 Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. Rice Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.; PMID=22984180; DOI=10.1073/pnas.1207324109 https://pubmed.ncbi.nlm.nih.gov/22984180/