query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation TkA03G460550 TkA03G460550 function TkA03G460550 Similar to MSI3: WD-40 repeat-containing protein MSI3 (Arabidopsis thaliana OX%3D3702) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0006260 DNA replication biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0006281 DNA repair biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0006310 DNA recombination biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.855; coverage=95.249; evalue=1.31e-160; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0006338 chromatin remodeling biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.75; coverage=95.012; evalue=0.0; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.75; coverage=95.012; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0006355 regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.75; coverage=95.012; evalue=0.0; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0009555 pollen development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0009793 embryo development ending in seed dormancy biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0009908 flower development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0009909 regulation of flower development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0010026 trichome differentiation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0010214 seed coat development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0016480 negative regulation of transcription by RNA polymerase III biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IPI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0031507 heterochromatin formation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0045787 positive regulation of cell cycle biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IGI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0048316 seed development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0048366 leaf development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0070828 heterochromatin organization biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.75; coverage=95.012; evalue=0.0; UniProt GO evidence=ISM:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0005677 chromatin silencing complex cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0031010 ISWI-type complex cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.75; coverage=95.012; evalue=0.0; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0032991 protein-containing complex cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IPI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0070176 DRM complex cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.75; coverage=95.012; evalue=0.0; UniProt GO evidence=IPI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0001222 transcription corepressor binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166; UniProt GO evidence=IPI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 GO GO:0042393 histone binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.75; coverage=95.012; evalue=0.0; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 KEGG ath:AT2G16780 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.5; coverage=95.012; evalue=0.0 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 KEGG ath:AT4G35050 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.75; coverage=95.012; evalue=0.0 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 KEGG ath:AT5G58230 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.794; coverage=94.537; evalue=4.74e-166 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 KEGG dosa:Os03g0640100 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.855; coverage=95.249; evalue=1.31e-160 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 KEGG sly:543534 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.49; coverage=98.812; evalue=1.09e-163 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_009658 GCA_047496595.1_OSU_TarKok_2.0 strict_1to1 True TkA03G460550 TkA03G460550 organism_homology O22469 sp|O22469|MSI3_ARATH WD-40 repeat-containing protein MSI3 Arabidopsis thaliana identity=68.5; coverage=96.259; evalue=1.41e-173; rank=6 TK1151 Swiss-Prot homology; source_gene=TkA03G460550; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA03G460550 False TkA03G460550 TkA03G460550 organism_homology Q10G81 sp|Q10G81|MSI1_ORYSJ Histone-binding protein MSI1 Oryza sativa subsp. japonica identity=55.8; coverage=97.506; evalue=1.58e-131; rank=10 TK1151 Swiss-Prot homology; source_gene=TkA03G460550; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA03G460550 False TkA03G460550 TkA03G460550 reference_gene_function At4g35050 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis No verified direct reference in this release TkA03G460550 TkA03G460550 reference_gene_function At2g16780 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis No verified direct reference in this release TkA03G460550 TkA03G460550 reference_gene_literature At5g58230 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis Arabidopsis MSI1 is required for epigenetic maintenance of reproductive development.; PMID=12736201; DOI=10.1242/dev.00470 https://pubmed.ncbi.nlm.nih.gov/12736201/ TkA03G460550 TkA03G460550 reference_gene_literature At5g58230 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development.; PMID=12970192; DOI=10.1093/emboj/cdg444 https://pubmed.ncbi.nlm.nih.gov/12970192/ TkA03G460550 TkA03G460550 reference_gene_literature At5g58230 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis Identification of new members of Fertilisation Independent Seed Polycomb Group pathway involved in the control of seed development in Arabidopsis thaliana.; PMID=15151989; DOI=10.1242/dev.01168 https://pubmed.ncbi.nlm.nih.gov/15151989/ TkA03G460550 TkA03G460550 reference_gene_literature At5g58230 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis Loss of function of MULTICOPY SUPPRESSOR OF IRA 1 produces nonviable parthenogenetic embryos in Arabidopsis.; PMID=15854908; DOI=10.1016/j.cub.2005.02.066 https://pubmed.ncbi.nlm.nih.gov/15854908/ TkA03G460550 TkA03G460550 reference_gene_literature At5g58230 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis Chromatin assembly factor CAF-1 is required for cellular differentiation during plant development.; PMID=17021044; DOI=10.1242/dev.02599 https://pubmed.ncbi.nlm.nih.gov/17021044/ TkA03G460550 TkA03G460550 reference_gene_literature At5g58230 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis.; PMID=18700816; DOI=10.1371/journal.pbio.0060194 https://pubmed.ncbi.nlm.nih.gov/18700816/ TkA03G460550 TkA03G460550 reference_gene_function Os03g0640100 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Rice No verified direct reference in this release