query	gene_id	record_type	id	name	namespace_or_position	evidence	source	query_reference	annotation_reference	annotation_gene_id	annotation_assembly	mapping_category	mapped_annotation
TkA01G407370	TkA01G407370	function	TkA01G407370	Similar to RHG1A: Probable E3 ubiquitin-protein ligase RHG1A (Arabidopsis thaliana OX%3D3702)		GFF-derived	GCA_047496595.1_OSU_TarKok_2.0	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0009845	seed germination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0009908	flower development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.887; coverage=28.175; evalue=2.59e-09; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0010218	response to far red light	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0010228	vegetative to reproductive phase transition of meristem	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0016567	protein ubiquitination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0005634	nucleus	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0008270	zinc ion binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0061630	ubiquitin protein ligase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	GO	GO:0061659	ubiquitin-like protein ligase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.053; coverage=15.079; evalue=5.65e-09; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	KEGG	ath:AT2G15530	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.887; coverage=28.175; evalue=2.59e-09	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	KEGG	ath:AT4G34040	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.053; coverage=15.079; evalue=5.65e-09	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	KEGG	ath:AT5G42940	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.683; coverage=32.54; evalue=3.82e-10	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	KEGG	dosa:Os04g0648800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.786; coverage=22.222; evalue=1.18e-09	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_002980	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G407370	TkA01G407370	organism_homology	Q9FMM4	sp|Q9FMM4|RHG1A_ARATH Probable E3 ubiquitin-protein ligase RHG1A	Arabidopsis thaliana	identity=42.7; coverage=59.42; evalue=1.06e-11; rank=1	TK1151 Swiss-Prot homology; source_gene=TkA01G407370; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA01G407370			False
TkA01G407370	TkA01G407370	organism_homology	Q7XTV7	sp|Q7XTV7|HIP1_ORYSJ Probable E3 ubiquitin-protein ligase HIP1	Oryza sativa subsp. japonica	identity=51.8; coverage=40.58; evalue=6.75e-11; rank=2	TK1151 Swiss-Prot homology; source_gene=TkA01G407370; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA01G407370			False
TkA01G407370	TkA01G407370	reference_gene_function	At5g42940	Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro.	Arabidopsis	No verified direct reference in this release							
TkA01G407370	TkA01G407370	reference_gene_literature	At2g15530	E3 ubiquitin-protein ligase that functions as a regulator of MED25 stability by targeting MED25 for degradation in a RING-H2- dependent way.	Arabidopsis	Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription.; PMID=22992513; DOI=10.1104/pp.112.205500	https://pubmed.ncbi.nlm.nih.gov/22992513/						
TkA01G407370	TkA01G407370	reference_gene_literature	At4g34040	E3 ubiquitin-protein ligase that functions as a regulator of MED25 stability by targeting MED25 for degradation in a RING-H2- dependent way.	Arabidopsis	Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription.; PMID=22992513; DOI=10.1104/pp.112.205500	https://pubmed.ncbi.nlm.nih.gov/22992513/						
TkA01G407370	TkA01G407370	reference_gene_function	Os04g0648800	Probable E3 ubiquitin-protein ligase that functions downstream of HAL3 and is required for HAL3-regulated plant growth.	Rice	No verified direct reference in this release							
TkA01G407370	TkA01G407370	reference_gene_function	Os01g0667700	Probable E3 ubiquitin-protein ligase.	Rice	No verified direct reference in this release