query	gene_id	record_type	id	name	namespace_or_position	evidence	source	query_reference	annotation_reference	annotation_gene_id	annotation_assembly	mapping_category	mapped_annotation
TkA01G099120	TkA01G099120	function	TkA01G099120	Similar to Transposon TX1 uncharacterized 149 kDa protein (Xenopus laevis OX%3D8355)		GFF-derived	GCA_047496595.1_OSU_TarKok_2.0	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0000724	double-strand break repair via homologous recombination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0006310	DNA recombination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.15; coverage=30.519; evalue=3.37e-45; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0006974	DNA damage response	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0010212	response to ionizing radiation	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0016567	protein ubiquitination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0031297	replication fork processing	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0031571	mitotic G1 DNA damage checkpoint signaling	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0032197	retrotransposition	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.15; coverage=30.519; evalue=3.37e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0036297	interstrand cross-link repair	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0090304	nucleic acid metabolic process	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.15; coverage=30.519; evalue=3.37e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:2000001	regulation of DNA damage checkpoint	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0005634	nucleus	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0005654	nucleoplasm	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0005829	cytosol	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0090734	site of DNA damage	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0002039	p53 binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0003723	RNA binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.15; coverage=30.519; evalue=3.37e-45; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0003824	catalytic activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=24.88; coverage=30.963; evalue=1.32e-49; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0003964	RNA-directed DNA polymerase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.15; coverage=30.519; evalue=3.37e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0004519	endonuclease activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.942; coverage=30.63; evalue=1.22e-44; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0008270	zinc ion binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0009036	type II site-specific deoxyribonuclease activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.15; coverage=30.519; evalue=3.37e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0016787	hydrolase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.942; coverage=30.63; evalue=1.22e-44; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0046872	metal ion binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.15; coverage=30.519; evalue=3.37e-45; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0061630	ubiquitin protein ligase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	GO	GO:0097371	MDM2/MDM4 family protein binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	KEGG	hsa:55159	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.087; coverage=11.889; evalue=4.03e-33	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_014780	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA01G099120	TkA01G099120	organism_homology	Q949Y5	sp|Q949Y5|EGY1_ARATH Probable zinc metalloprotease EGY1, chloroplastic	Arabidopsis thaliana	identity=69.1; coverage=100.0; evalue=2.28e-271; rank=15	TK1151 Swiss-Prot homology; source_gene=TkA01G099120; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA01G099120			False
TkA01G099120	TkA01G099120	organism_homology	Q852K0	sp|Q852K0|EGY1_ORYSJ Probable zinc metalloprotease EGY1, chloroplastic	Oryza sativa subsp. japonica	identity=77.4; coverage=77.661; evalue=1.27e-254; rank=16	TK1151 Swiss-Prot homology; source_gene=TkA01G099120; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA01G099120			False
TkA01G099120	TkA01G099120	reference_gene_literature	At5g35220	Membrane-associated and ATP-independent metalloprotease required for development of both thylakoid grana and well-organized lamellae in chloroplast.	Arabidopsis	EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development.; PMID=15659096; DOI=10.1111/j.1365-313x.2004.02308.x	https://pubmed.ncbi.nlm.nih.gov/15659096/						
TkA01G099120	TkA01G099120	reference_gene_literature	At5g35220	Membrane-associated and ATP-independent metalloprotease required for development of both thylakoid grana and well-organized lamellae in chloroplast.	Arabidopsis	EGY1 plays a role in regulation of endodermal plastid size and number that are involved in ethylene-dependent gravitropism of light-grown Arabidopsis hypocotyls.; PMID=18097640; DOI=10.1007/s11103-007-9273-5	https://pubmed.ncbi.nlm.nih.gov/18097640/						
TkA01G099120	TkA01G099120	reference_gene_literature	At5g35220	Membrane-associated and ATP-independent metalloprotease required for development of both thylakoid grana and well-organized lamellae in chloroplast.	Arabidopsis	Arabidopsis plastid AMOS1/EGY1 integrates abscisic acid signaling to regulate global gene expression response to ammonium stress.; PMID=23064408; DOI=10.1104/pp.112.206508	https://pubmed.ncbi.nlm.nih.gov/23064408/						
TkA01G099120	TkA01G099120	reference_gene_function	At5g35210	Membrane-bound transcription factor required for the plastid-to-nucleus retrograde signaling.	Arabidopsis	No verified direct reference in this release							
TkA01G099120	TkA01G099120	reference_gene_function	P92555	Uncharacterized mitochondrial protein AtMg01250.	Arabidopsis	No verified direct reference in this release							
TkA01G099120	TkA01G099120	reference_gene_function	Os03g0792400	Probable membrane-associated metalloprotease that may be involved in chloroplast development.	Rice	No verified direct reference in this release							
TkA01G099120	TkA01G099120	reference_gene_function	B8AD72	Probable membrane-associated metalloprotease that may be involved in chloroplast development.	Rice	No verified direct reference in this release							
TkA01G099120	TkA01G099120	reference_gene_function	Os01g0142100	Probable membrane-associated metalloprotease that may be involved in chloroplast development.	Rice	No verified direct reference in this release							
