query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation LXL04_017298 LXL04_017298 function LXL04_017298 Similar to AXS2: UDP-D-apiose/UDP-D-xylose synthase 2 (Arabidopsis thaliana OX%3D3702) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0006508 proteolysis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=81.25; coverage=14.884; evalue=3.23e-09; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0009226 nucleotide-sugar biosynthetic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.463; coverage=100.465; evalue=2.18e-57; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0016579 protein deubiquitination biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=81.25; coverage=14.884; evalue=3.23e-09; UniProt GO evidence=IEA:InterPro UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0031647 regulation of protein stability biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=81.25; coverage=14.884; evalue=3.23e-09; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0033320 UDP-D-xylose biosynthetic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IGI:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0033352 UDP-D-apiose biosynthetic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IGI:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0071555 cell wall organization biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0005576 extracellular region cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=HDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=81.25; coverage=14.884; evalue=3.23e-09; UniProt GO evidence=IDA:TIGR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0005737 cytoplasm cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0005777 peroxisome cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.463; coverage=100.465; evalue=2.18e-57; UniProt GO evidence=HDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0005794 Golgi apparatus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=ISM:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0005829 cytosol cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=HDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0010494 cytoplasmic stress granule cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.463; coverage=100.465; evalue=2.18e-57; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0048046 apoplast cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=HDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0004843 cysteine-type deubiquitinase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=81.25; coverage=14.884; evalue=3.23e-09; UniProt GO evidence=IDA:TIGR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0016831 carboxy-lyase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.794; coverage=99.535; evalue=1.58e-47; UniProt GO evidence=IEA:InterPro UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0042802 identical protein binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0042803 protein homodimerization activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0046982 protein heterodimerization activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IEA:UniProtKB-ARBA UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0048040 UDP-glucuronate decarboxylase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IEA:UniProtKB-EC UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0051287 NAD binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.463; coverage=100.465; evalue=2.18e-57; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 GO GO:0102765 UDP-D-apiose synthase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58; UniProt GO evidence=IGI:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 KEGG ath:AT1G08200 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.467; coverage=99.535; evalue=3.91e-58 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 KEGG ath:AT2G22310 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=81.25; coverage=14.884; evalue=3.23e-09 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 KEGG ath:AT2G27860 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.463; coverage=100.465; evalue=2.18e-57 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 KEGG ath:AT4G39910 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.25; coverage=14.884; evalue=3.63e-09 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 KEGG dosa:Os01g0969100 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.794; coverage=99.535; evalue=1.58e-47 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_017298 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_017298 LXL04_017298 organism_homology Q9SGE0 UDP-D-apiose/UDP-D-xylose synthase 2 OS=Arabidopsis thaliana OX=3702 GN=AXS2 PE=1 SV=1 Arabidopsis thaliana identity=50.467; coverage=82.791; evalue=3.91e-58; rank=1 OH-1004 Swiss-Prot homology; source_gene=LXL04_017298; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_017298 False LXL04_017298 LXL04_017298 organism_homology Q8S9Z2 UDP-D-apiose/UDP-D-xylose synthase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0969100 PE=2 SV=1 Oryza sativa subsp. japonica identity=45.794; coverage=82.791; evalue=1.58e-47; rank=3 OH-1004 Swiss-Prot homology; source_gene=LXL04_017298; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_017298 False LXL04_017298 LXL04_017298 reference_gene_literature At1g08200 Together with AXS1, catalyzes the conversion of UDP-D- glucuronate into a mixture of UDP-D-apiose (UDP-Api) as the main product and UDP-D-xylose to a lesser extent, via a cycle of oxidation and reduction. Arabidopsis UDP-Api/UDP-Xyl synthases affect plant development by controlling the content of UDP-Api to regulate the RG-II-borate complex.; PMID=32662159; DOI=10.1111/tpj.14921 https://pubmed.ncbi.nlm.nih.gov/32662159/ LXL04_017298 LXL04_017298 reference_gene_literature At2g27860 Together with AXS2, catalyzes the conversion of UDP-D- glucuronate into a mixture of UDP-D-apiose (UDP-Api) as the main product and UDP-D-xylose to a lesser extent, via a cycle of oxidation and reduction. Arabidopsis The biosynthesis of the branched-chain sugar d-apiose in plants: functional cloning and characterization of a UDP-d-apiose/UDP-d-xylose synthase from Arabidopsis.; PMID=12969423; DOI=10.1046/j.1365-313x.2003.01841.x https://pubmed.ncbi.nlm.nih.gov/12969423/ LXL04_017298 LXL04_017298 reference_gene_literature At2g27860 Together with AXS2, catalyzes the conversion of UDP-D- glucuronate into a mixture of UDP-D-apiose (UDP-Api) as the main product and UDP-D-xylose to a lesser extent, via a cycle of oxidation and reduction. Arabidopsis Deciphering the enzymatic mechanism of sugar ring contraction in UDP-apiose biosynthesis.; PMID=31844840; DOI=10.1038/s41929-019-0382-8 https://pubmed.ncbi.nlm.nih.gov/31844840/ LXL04_017298 LXL04_017298 reference_gene_literature At2g27860 Together with AXS2, catalyzes the conversion of UDP-D- glucuronate into a mixture of UDP-D-apiose (UDP-Api) as the main product and UDP-D-xylose to a lesser extent, via a cycle of oxidation and reduction. Arabidopsis UDP-Api/UDP-Xyl synthases affect plant development by controlling the content of UDP-Api to regulate the RG-II-borate complex.; PMID=32662159; DOI=10.1111/tpj.14921 https://pubmed.ncbi.nlm.nih.gov/32662159/ LXL04_017298 LXL04_017298 reference_gene_literature At2g22310 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Arabidopsis Ubiquitin-specific proteases from Arabidopsis thaliana: cloning of AtUBP5 and analysis of substrate specificity of AtUBP3, AtUBP4, and AtUBP5 using Escherichia coli in vivo and in vitro assays.; PMID=10898935; DOI=10.1006/abbi.2000.1874 https://pubmed.ncbi.nlm.nih.gov/10898935/ LXL04_017298 LXL04_017298 reference_gene_literature At2g22310 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Arabidopsis The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis.; PMID=17905865; DOI=10.1104/pp.106.095323 https://pubmed.ncbi.nlm.nih.gov/17905865/ LXL04_017298 LXL04_017298 reference_gene_literature At4g39910 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Arabidopsis Ubiquitin-specific proteases from Arabidopsis thaliana: cloning of AtUBP5 and analysis of substrate specificity of AtUBP3, AtUBP4, and AtUBP5 using Escherichia coli in vivo and in vitro assays.; PMID=10898935; DOI=10.1006/abbi.2000.1874 https://pubmed.ncbi.nlm.nih.gov/10898935/ LXL04_017298 LXL04_017298 reference_gene_literature At4g39910 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Arabidopsis The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis.; PMID=17905865; DOI=10.1104/pp.106.095323 https://pubmed.ncbi.nlm.nih.gov/17905865/ LXL04_017298 LXL04_017298 reference_gene_function Os01g0969100 Catalyzes the conversion of UDP-D-glucuronate to a mixture of UDP-D-apiose and UDP-D-xylose. Rice No verified direct reference in this release